1 Response_reg#1
4-119 aa · 116 aa · 51.3% of protein
Raw token
Response_reg:4:1.17e-37:119:116:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
C7386_RS06010
Response regulator OmpR family
Agathobaculum butyriciproducens · GCF_003096535
ClassRRTypeOmpRLength226 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003096535#C7386_RS06010Stable P2CS identifier used across views.
GenomeGCF_003096535Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Butyricicoccaceae; Agathobaculum
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length226 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage190 / 226 aa (84.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa226 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
151-224 aa · 74 aa · 32.7% of protein
Raw token
Trans_reg_C:151:2.54e-29:224:77:77- Raw architecture: Response_reg:4:1.17e-37:119:116:111#Trans_reg_C:151:2.54e-29:224:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003096535::NZ_QEKJ01000005.1::G00019
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span72901-75104Genomic interval covered by the local TCS group.
Identifiers
Old locus tagC7386_10561RefSeq proteinWP_116705062.1
Context group ID
GCF_003096535::NZ_QEKJ01000005.1::G00019Context members
C7386_RS06005C7386_RS06010
Partner locus tags
C7386_RS06005C7386_RS06010
Partner old locus tags
C7386_10560C7386_10561
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_116705062.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagC7386_RS06010Primary locus identifier stored in the genes table.
Old locus tagC7386_10561Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QEKJ01000005.1Sequence record reported by the local genomic context database.
Genomic interval74 424-75 104 nt681 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span72 901-75 104 ntGCF_003096535::NZ_QEKJ01000005.1::G00019
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003096535::NZ_QEKJ01000005.1::G00019Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QEKJ01000005.1All displayed genes belong to this local TCS context.
Neighborhood span72 901-75 104 nt2 204 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
72 901 nt75 104 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
C7386_RS06005GCF_003096535#C7386_RS06005
HKClassic
72 901-74 427 nt · Reverse (-)
C7386_RS06010GCF_003096535#C7386_RS06010
RROmpRCurrent focus
74 424-75 104 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003096535#C7386_RS06010The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1420219
Simplified PFAM architecture for RROC_1420219
PFAM domain coverage: 188 / 226 aa (83.2%)
1 aa226 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-118] | Trans_reg_C[152-224]
- Domain count: 2
- Matched identifier: RROC_1420219
- Positioned domains: Response_reg 4-118 ; Response_reg 4-118 ; Trans_reg_C 152-224 ; Trans_reg_C 152-224
Cluster members and taxonomy
Representative gene: GCF_003096535#C7386_RS06010
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 628 085 · GCF_003096535
AssemblyASM309653v1 · Scaffoldhaploid
Genome composition2 809 383 bp · 54,0% GCAgathobaculum butyriciproducens
Signal transduction countsGenes 60 · HK 28 · RR 30CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyButyricicoccaceaeGenusAgathobaculum
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Butyricicoccaceae7Agathobaculum
Related genes
Preview from the same derived genome key