1 Response_reg#1
5-116 aa · 112 aa · 48.3% of protein
Raw token
Response_reg:5:5.12e-31:116:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
C7386_RS01405
Response regulator OmpR family
Agathobaculum butyriciproducens · GCF_003096535
ClassRRTypeOmpRLength232 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003096535#C7386_RS01405Stable P2CS identifier used across views.
GenomeGCF_003096535Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Butyricicoccaceae; Agathobaculum
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length232 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage186 / 232 aa (80.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa232 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
150-223 aa · 74 aa · 31.9% of protein
Raw token
Trans_reg_C:150:3.42e-29:223:77:77- Raw architecture: Response_reg:5:5.12e-31:116:113:111#Trans_reg_C:150:3.42e-29:223:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003096535::NZ_QEKJ01000001.1::G00005
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span298722-301056Genomic interval covered by the local TCS group.
Identifiers
Old locus tagC7386_101283RefSeq proteinWP_110435289.1
Context group ID
GCF_003096535::NZ_QEKJ01000001.1::G00005Context members
C7386_RS01400C7386_RS01405
Partner locus tags
C7386_RS01400C7386_RS01405
Partner old locus tags
C7386_101282C7386_101283
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_110435289.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagC7386_RS01405Primary locus identifier stored in the genes table.
Old locus tagC7386_101283Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QEKJ01000001.1Sequence record reported by the local genomic context database.
Genomic interval300 358-301 056 nt699 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span298 722-301 056 ntGCF_003096535::NZ_QEKJ01000001.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003096535::NZ_QEKJ01000001.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QEKJ01000001.1All displayed genes belong to this local TCS context.
Neighborhood span298 722-301 056 nt2 335 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
298 722 nt301 056 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
C7386_RS01400GCF_003096535#C7386_RS01400
HKClassic
298 722-300 374 nt · Reverse (-)
C7386_RS01405GCF_003096535#C7386_RS01405
RROmpRCurrent focus
300 358-301 056 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003096535#C7386_RS01405The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1128526
Simplified PFAM architecture for RROC_1128526
PFAM domain coverage: 185 / 232 aa (79.7%)
1 aa232 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-115] | Trans_reg_C[150-223]
- Domain count: 2
- Matched identifier: RROC_1128526
- Positioned domains: Response_reg 5-115 ; Response_reg 5-115 ; Trans_reg_C 150-223 ; Trans_reg_C 150-223
Cluster members and taxonomy
Representative gene: GCF_003096535#C7386_RS01405
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 628 085 · GCF_003096535
AssemblyASM309653v1 · Scaffoldhaploid
Genome composition2 809 383 bp · 54,0% GCAgathobaculum butyriciproducens
Signal transduction countsGenes 60 · HK 28 · RR 30CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyButyricicoccaceaeGenusAgathobaculum
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Butyricicoccaceae7Agathobaculum
Related genes
Preview from the same derived genome key