1 Response_reg#1
18-119 aa · 102 aa · 50.7% of protein
Raw token
Response_reg:18:0.0000000000171:119:102:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DD701_RS11265
Response regulator, unclassified
Bifidobacterium longum · GCF_003094855
ClassRRTypeunclassifiedLength201 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003094855#DD701_RS11265Stable P2CS identifier used across views.
GenomeGCF_003094855Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length201 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage102 / 201 aa (50.7%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:18:0.0000000000171:119:102:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003094855::NZ_QDIQ01000008.1::G00011
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span55741-56346Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_003094855::NZ_QDIQ01000008.1::G00011Context members
DD701_RS11265
Partner locus tags
DD701_RS11265
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_050388385.1Primary protein accession used for annex mappings.
UniProt accessionA0ABD7WN74Primary UniProt accession resolved in the annex database.
UniProt IDA0ABD7WN74_BIFLLDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDD701_RS11265Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_QDIQ01000008.1Sequence record reported by the local genomic context database.
Genomic interval55 741-56 346 nt606 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span55 741-56 346 ntGCF_003094855::NZ_QDIQ01000008.1::G00011
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003094855::NZ_QDIQ01000008.1::G00011Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QDIQ01000008.1All displayed genes belong to this local TCS context.
Neighborhood span55 741-56 346 nt606 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
55 741 nt56 346 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DD701_RS11265GCF_003094855#DD701_RS11265
RRunclassifiedCurrent focus
55 741-56 346 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003370035#CE158_RS11325Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_1129206
Simplified PFAM architecture for RROC_1129206
PFAM domain coverage: 112 / 232 aa (48.3%)
1 aa232 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[49-160]
- Domain count: 1
- Matched identifier: RROC_1129206
- Positioned domains: Response_reg 49-160 ; Response_reg 49-160
Cluster members and taxonomy
Representative gene: GCF_003370035#CE158_RS11325
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 216 816 · GCF_003094855
AssemblyASM309485v1 · Contighaploid
Genome composition2 398 181 bp · 60,0% GCBifidobacterium longum
Signal transduction countsGenes 23 · HK 10 · RR 11CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key