1 Response_reg#1
49-150 aa · 102 aa · 44.0% of protein
Raw token
Response_reg:49:0.0000000000185:150:102:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CE158_RS11325
Response regulator, unclassified
Bifidobacterium longum · GCF_003370035
ClassRRTypeunclassifiedLength232 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003370035#CE158_RS11325Stable P2CS identifier used across views.
GenomeGCF_003370035Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length232 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage102 / 232 aa (44.0%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:49:0.0000000000185:150:102:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003370035::NZ_NJNW01000012.1::G00002
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span24695-25393Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCE158_07565RefSeq proteinWP_236836914.1
Context group ID
GCF_003370035::NZ_NJNW01000012.1::G00002Context members
CE158_RS11325
Partner locus tags
CE158_RS11325
Partner old locus tags
CE158_07565
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_236836914.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCE158_RS11325Primary locus identifier stored in the genes table.
Old locus tagCE158_07565Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NJNW01000012.1Sequence record reported by the local genomic context database.
Genomic interval24 695-25 393 nt699 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span24 695-25 393 ntGCF_003370035::NZ_NJNW01000012.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003370035::NZ_NJNW01000012.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NJNW01000012.1All displayed genes belong to this local TCS context.
Neighborhood span24 695-25 393 nt699 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
24 695 nt25 393 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
CE158_RS11325GCF_003370035#CE158_RS11325
RRunclassifiedCurrent focus
24 695-25 393 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003370035#CE158_RS11325The current gene is the representative for this cluster.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_1129206
Simplified PFAM architecture for RROC_1129206
PFAM domain coverage: 112 / 232 aa (48.3%)
1 aa232 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[49-160]
- Domain count: 1
- Matched identifier: RROC_1129206
- Positioned domains: Response_reg 49-160 ; Response_reg 49-160
Cluster members and taxonomy
Representative gene: GCF_003370035#CE158_RS11325
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 216 816 · GCF_003370035
AssemblyASM337003v1 · Scaffoldhaploid
Genome composition2 333 415 bp · 60,0% GCBifidobacterium longum
Signal transduction countsGenes 22 · HK 9 · RR 11CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key