1 Response_reg#1
46-152 aa · 107 aa · 42.1% of protein
Raw token
Response_reg:46:8.16e-30:152:108:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DD701_RS03350
Response regulator, AmiR_NasR family
Bifidobacterium longum · GCF_003094855
ClassRRTypeAmiR_NasRLength254 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003094855#DD701_RS03350Stable P2CS identifier used across views.
GenomeGCF_003094855Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regANTAR
Protein length254 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage156 / 254 aa (61.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 ANTARSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 ANTAR#2
192-240 aa · 49 aa · 19.3% of protein
Raw token
ANTAR:192:3.95e-17:240:49:49- Raw architecture: Response_reg:46:8.16e-30:152:108:111#ANTAR:192:3.95e-17:240:49:49
- Domain description: 1 Response_reg,1 ANTAR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003094855::NZ_QDIQ01000002.1::G00004
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span229697-230461Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDD701_03355RefSeq proteinWP_116463809.1
Context group ID
GCF_003094855::NZ_QDIQ01000002.1::G00004Context members
DD701_RS03350
Partner locus tags
DD701_RS03350
Partner old locus tags
DD701_03355
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_116463809.1Primary protein accession used for annex mappings.
UniProt accessionA0ABD7WME2Primary UniProt accession resolved in the annex database.
UniProt IDA0ABD7WME2_BIFLLDisplay identifier provided by UniProt.
GO / PubMed0 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDD701_RS03350Primary locus identifier stored in the genes table.
Old locus tagDD701_03355Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QDIQ01000002.1Sequence record reported by the local genomic context database.
Genomic interval229 697-230 461 nt765 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span229 697-230 461 ntGCF_003094855::NZ_QDIQ01000002.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003094855::NZ_QDIQ01000002.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QDIQ01000002.1All displayed genes belong to this local TCS context.
Neighborhood span229 697-230 461 nt765 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
229 697 nt230 461 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DD701_RS03350GCF_003094855#DD701_RS03350
RRAmiR_NasRCurrent focus
229 697-230 461 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003094635#DD678_RS05705Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + ANTAR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0689373
Simplified PFAM architecture for RROC_0689373
PFAM domain coverage: 161 / 254 aa (63.4%)
1 aa254 aa
Response_regANTAR
- Simplified architecture: Response_reg + ANTAR
- Raw architecture: Response_reg[46-153] | ANTAR[188-240]
- Domain count: 2
- Matched identifier: RROC_0689373
- Positioned domains: Response_reg 46-153 ; Response_reg 46-153 ; ANTAR 188-240 ; ANTAR 188-240
Cluster members and taxonomy
Representative gene: GCF_003094635#DD678_RS05705
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 216 816 · GCF_003094855
AssemblyASM309485v1 · Contighaploid
Genome composition2 398 181 bp · 60,0% GCBifidobacterium longum
Signal transduction countsGenes 23 · HK 10 · RR 11CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key