1 dCache_1#1
47-284 aa · 238 aa · 39.7% of protein
Raw token
dCache_1:47:0.000000000000171:284:244:195P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
C7U56_RS13300
Histidine kinase, Classic
Clostridium fessum · GCF_003024715
ClassHKTypeClassicLength599 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003024715#C7U56_RS13300Stable P2CS identifier used across views.
GenomeGCF_003024715Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
dCache_1HAMPHis_kinaseHATPase_c
Protein length599 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage496 / 599 aa (82.8%)Merged over positioned domains only.
Domain description1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa599 aa
Domain-by-domain annotation4 items
2 HAMP#2
301-369 aa · 69 aa · 11.5% of protein
Raw token
HAMP:301:0.0000000000244:369:69:693 His_kinase#3
386-464 aa · 79 aa · 13.2% of protein
Raw token
His_kinase:386:5.05e-35:464:79:804 HATPase_c#4
480-589 aa · 110 aa · 18.4% of protein
Raw token
HATPase_c:480:1.62e-18:589:112:109- Raw architecture: dCache_1:47:0.000000000000171:284:244:195#HAMP:301:0.0000000000244:369:69:69#His_kinase:386:5.05e-35:464:79:80#HATPase_c:480:1.62e-18:589:112:109
- Domain description: 1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003024715::NZ_PYLO01000005.1::G00031
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span157958-161385Genomic interval covered by the local TCS group.
Identifiers
Old locus tagC7U56_13290RefSeq proteinWP_107001616.1
Context group ID
GCF_003024715::NZ_PYLO01000005.1::G00031Context members
C7U56_RS13300C7U56_RS13305
Partner locus tags
C7U56_RS13300C7U56_RS13305
Partner old locus tags
C7U56_13290C7U56_13295
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_107001616.1Primary protein accession used for annex mappings.
UniProt accessionA0A2T3FLP3Primary UniProt accession resolved in the annex database.
UniProt IDA0A2T3FLP3_9CLOTDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagC7U56_RS13300Primary locus identifier stored in the genes table.
Old locus tagC7U56_13290Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_PYLO01000005.1Sequence record reported by the local genomic context database.
Genomic interval157 958-159 757 nt1 800 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span157 958-161 385 ntGCF_003024715::NZ_PYLO01000005.1::G00031
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003024715::NZ_PYLO01000005.1::G00031Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_PYLO01000005.1All displayed genes belong to this local TCS context.
Neighborhood span157 958-161 385 nt3 428 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
157 958 nt161 385 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
C7U56_RS13300GCF_003024715#C7U56_RS13300
HKClassicCurrent focus
157 958-159 757 nt · Reverse (-)
C7U56_RS13305GCF_003024715#C7U56_RS13305
RRunclassified
159 757-161 385 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003024715#C7U56_RS13300The current gene is the representative for this cluster.
PFAM architecturedCache_1 + HAMP + His_kinase + HATPase_c4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1058230
Simplified PFAM architecture for HKOC_1058230
PFAM domain coverage: 474 / 599 aa (79.1%)
1 aa599 aa
dCache_1HAMPHis_kinaseHATPase_c
- Simplified architecture: dCache_1 + HAMP + His_kinase + HATPase_c
- Raw architecture: dCache_1[49-283] | HAMP[319-369] | His_kinase[386-464] | HATPase_c[479-587]
- Domain count: 4
- Matched identifier: HKOC_1058230
- Positioned domains: dCache_1 49-283 ; HAMP 319-369 ; His_kinase 386-464 ; HATPase_c 479-587
Cluster members and taxonomy
Representative gene: GCF_003024715#C7U56_RS13300
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 126 740 · GCF_003024715
AssemblyASM302471v1 · Contighaploid
Genome composition3 277 016 bp · 48,5% GCClostridium fessum
Signal transduction countsGenes 61 · HK 32 · RR 27CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key