1 Response_reg#1
5-127 aa · 123 aa · 50.8% of protein
Raw token
Response_reg:5:2.95e-22:127:123:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
C7U56_RS02295
Response regulator OmpR family
Clostridium fessum · GCF_003024715
ClassRRTypeOmpRLength242 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003024715#C7U56_RS02295Stable P2CS identifier used across views.
GenomeGCF_003024715Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length242 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage197 / 242 aa (81.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa242 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
161-234 aa · 74 aa · 30.6% of protein
Raw token
Trans_reg_C:161:1.98e-35:234:77:77- Raw architecture: Response_reg:5:2.95e-22:127:123:111#Trans_reg_C:161:1.98e-35:234:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003024715::NZ_PYLO01000001.1::G00005
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span481513-483649Genomic interval covered by the local TCS group.
Identifiers
Old locus tagC7U56_02295RefSeq proteinWP_106999975.1
Context group ID
GCF_003024715::NZ_PYLO01000001.1::G00005Context members
C7U56_RS02290C7U56_RS02295
Partner locus tags
C7U56_RS02290C7U56_RS02295
Partner old locus tags
C7U56_02290C7U56_02295
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_106999975.1Primary protein accession used for annex mappings.
UniProt accessionA0A2T3FU40Primary UniProt accession resolved in the annex database.
UniProt IDA0A2T3FU40_9CLOTDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagC7U56_RS02295Primary locus identifier stored in the genes table.
Old locus tagC7U56_02295Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_PYLO01000001.1Sequence record reported by the local genomic context database.
Genomic interval482 921-483 649 nt729 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span481 513-483 649 ntGCF_003024715::NZ_PYLO01000001.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003024715::NZ_PYLO01000001.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_PYLO01000001.1All displayed genes belong to this local TCS context.
Neighborhood span481 513-483 649 nt2 137 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
481 513 nt483 649 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
C7U56_RS02290GCF_003024715#C7U56_RS02290
HKClassic
481 513-482 913 nt · Reverse (-)
C7U56_RS02295GCF_003024715#C7U56_RS02295
RROmpRCurrent focus
482 921-483 649 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003024715#C7U56_RS02295The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0847990
Simplified PFAM architecture for RROC_0847990
PFAM domain coverage: 195 / 242 aa (80.6%)
1 aa242 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-126] | Trans_reg_C[162-234]
- Domain count: 2
- Matched identifier: RROC_0847990
- Positioned domains: Response_reg 5-126 ; Response_reg 5-126 ; Trans_reg_C 162-234 ; Trans_reg_C 162-234
Cluster members and taxonomy
Representative gene: GCF_003024715#C7U56_RS02295
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 126 740 · GCF_003024715
AssemblyASM302471v1 · Contighaploid
Genome composition3 277 016 bp · 48,5% GCClostridium fessum
Signal transduction countsGenes 61 · HK 32 · RR 27CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key