1 HisKA#1
356-414 aa · 59 aa · 10.2% of protein
Raw token
HisKA:356:0.00000000049:414:59:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CQ058_RS07080
Histidine kinase, Classic
Bacillus sp. MYb56 · GCF_002976445
ClassHKTypeClassicLength580 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002976445#CQ058_RS07080Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length580 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage167 / 580 aa (28.8%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 HATPase_c#2
471-578 aa · 108 aa · 18.6% of protein
Raw token
HATPase_c:471:5.34e-31:578:108:109- Raw architecture: HisKA:356:0.00000000049:414:59:64#HATPase_c:471:5.34e-31:578:108:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002976445::NZ_PCOH01000004.1::G00023
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span41340-43793Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCQ058_07055RefSeq proteinWP_002188712.1
Context group ID
GCF_002976445::NZ_PCOH01000004.1::G00023Context members
CQ058_RS07075CQ058_RS07080
Partner locus tags
CQ058_RS07075CQ058_RS07080
Partner old locus tags
CQ058_07050CQ058_07055
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_002188712.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCQ058_RS07080Primary locus identifier stored in the genes table.
Old locus tagCQ058_07055Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_PCOH01000004.1Sequence record reported by the local genomic context database.
Genomic interval42 051-43 793 nt1 743 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span41 340-43 793 ntGCF_002976445::NZ_PCOH01000004.1::G00023
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002976445::NZ_PCOH01000004.1::G00023Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_PCOH01000004.1All displayed genes belong to this local TCS context.
Neighborhood span41 340-43 793 nt2 454 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
41 340 nt43 793 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CQ058_RS07075GCF_002976445#CQ058_RS07075
RROmpR
41 340-42 041 nt · Forward (+)
CQ058_RS07080GCF_002976445#CQ058_RS07080
HKClassicCurrent focus
42 051-43 793 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002976445#CQ058_RS07080The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1162987
Simplified PFAM architecture for HKOC_1162987
PFAM domain coverage: 167 / 580 aa (28.8%)
1 aa580 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[356-414] | HATPase_c[471-578]
- Domain count: 2
- Matched identifier: HKOC_1162987
- Positioned domains: HisKA 356-414 ; HATPase_c 471-578
Cluster members and taxonomy
Representative gene: GCF_002976445#CQ058_RS07080
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 827 287 · GCF_002976445
AssemblyASM297644v1 · Scaffoldhaploid
Genome composition5 929 383 bp · 35,0% GCBacillus sp. MYb56
Signal transduction countsGenes 131 · HK 71 · RR 60CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key