1 Response_reg#1
5-114 aa · 110 aa · 48.2% of protein
Raw token
Response_reg:5:3.31e-41:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CQ058_RS00900
Response regulator OmpR family
Bacillus sp. MYb56 · GCF_002976445
ClassRRTypeOmpRLength228 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002976445#CQ058_RS00900Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length228 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 228 aa (82.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 Trans_reg_C#2
152-228 aa · 77 aa · 33.8% of protein
Raw token
Trans_reg_C:152:1.05e-34:228:77:77- Raw architecture: Response_reg:5:3.31e-41:114:111:111#Trans_reg_C:152:1.05e-34:228:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002976445::NZ_PCOH01000001.1::G00004
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span193945-195710Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCQ058_00890RefSeq proteinWP_002189634.1
Context group ID
GCF_002976445::NZ_PCOH01000001.1::G00004Context members
CQ058_RS00895CQ058_RS00900
Partner locus tags
CQ058_RS00895CQ058_RS00900
Partner old locus tags
CQ058_00885CQ058_00890
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_002189634.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCQ058_RS00900Primary locus identifier stored in the genes table.
Old locus tagCQ058_00890Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_PCOH01000001.1Sequence record reported by the local genomic context database.
Genomic interval195 024-195 710 nt687 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span193 945-195 710 ntGCF_002976445::NZ_PCOH01000001.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002976445::NZ_PCOH01000001.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_PCOH01000001.1All displayed genes belong to this local TCS context.
Neighborhood span193 945-195 710 nt1 766 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
193 945 nt195 710 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CQ058_RS00895GCF_002976445#CQ058_RS00895
HKClassic
193 945-195 027 nt · Reverse (-)
CQ058_RS00900GCF_002976445#CQ058_RS00900
RROmpRCurrent focus
195 024-195 710 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000513155#BW1_RS03020Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1305150
Simplified PFAM architecture for RROC_1305150
PFAM domain coverage: 186 / 228 aa (81.6%)
1 aa228 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-114] | Trans_reg_C[152-227]
- Domain count: 2
- Matched identifier: RROC_1305150
- Positioned domains: Response_reg 5-114 ; Response_reg 5-114 ; Trans_reg_C 152-227 ; Trans_reg_C 152-227
Cluster members and taxonomy
Representative gene: GCF_000513155#BW1_RS03020
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 827 287 · GCF_002976445
AssemblyASM297644v1 · Scaffoldhaploid
Genome composition5 929 383 bp · 35,0% GCBacillus sp. MYb56
Signal transduction countsGenes 131 · HK 71 · RR 60CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key