1 HisKA_3#1
265-329 aa · 65 aa · 13.4% of protein
Raw token
HisKA_3:265:0.00000000000829:329:65:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
NRBB04_RS08140
Histidine kinase, Classic
Bifidobacterium breve · GCF_002838285
ClassHKTypeClassicLength485 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002838285#NRBB04_RS08140Stable P2CS identifier used across views.
GenomeGCF_002838285Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length485 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage151 / 485 aa (31.1%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa485 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
395-480 aa · 86 aa · 17.7% of protein
Raw token
HATPase_c:395:0.0000382:480:96:109- Raw architecture: HisKA_3:265:0.00000000000829:329:65:68#HATPase_c:395:0.0000382:480:96:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002838285::NZ_CP021386.1::G00014
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1828552-1830751Genomic interval covered by the local TCS group.
Identifiers
Old locus tagNRBB04_1553RefSeq proteinWP_224743689.1
Context group ID
GCF_002838285::NZ_CP021386.1::G00014Context members
NRBB04_RS08140NRBB04_RS08145
Partner locus tags
NRBB04_RS08140NRBB04_RS08145
Partner old locus tags
NRBB04_1553NRBB04_1554
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_224743689.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagNRBB04_RS08140Primary locus identifier stored in the genes table.
Old locus tagNRBB04_1553Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP021386.1Sequence record reported by the local genomic context database.
Genomic interval1 828 552-1 830 009 nt1 458 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 828 552-1 830 751 ntGCF_002838285::NZ_CP021386.1::G00014
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002838285::NZ_CP021386.1::G00014Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP021386.1All displayed genes belong to this local TCS context.
Neighborhood span1 828 552-1 830 751 nt2 200 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 828 552 nt1 830 751 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
NRBB04_RS08140GCF_002838285#NRBB04_RS08140
HKClassicCurrent focus
1 828 552-1 830 009 nt · Forward (+)
NRBB04_RS08145GCF_002838285#NRBB04_RS08145
RRNarL
1 830 023-1 830 751 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001595435#APS66_RS07380Use this link to inspect the representative gene detail.
PFAM architectureHisKA_31 domain in the representative PFAM annotation.
PFAM architecture for HKOC_1568240
Simplified PFAM architecture for HKOC_1568240
PFAM domain coverage: 68 / 486 aa (14.0%)
1 aa486 aa
HisKA_3
- Simplified architecture: HisKA_3
- Raw architecture: HisKA_3[266-333]
- Domain count: 1
- Matched identifier: HKOC_1568240
- Positioned domains: HisKA_3 266-333
Cluster members and taxonomy
Representative gene: GCF_001595435#APS66_RS07380
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 685 · GCF_002838285
AssemblyASM283828v1 · Complete Genomehaploid
Genome composition2 324 647 bp · 58,5% GCBifidobacterium breve
Signal transduction countsGenes 31 · HK 11 · RR 17CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key