1 HisKA_3#1
247-309 aa · 63 aa · 7.6% of protein
Raw token
HisKA_3:247:5.65e-16:309:63:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
NRBB04_RS04170
Histidine kinase, Classic
Bifidobacterium breve · GCF_002838285
ClassHKTypeClassicLength824 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002838285#NRBB04_RS04170Stable P2CS identifier used across views.
GenomeGCF_002838285Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length824 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage226 / 824 aa (27.4%)Merged over positioned domains only.
Domain description2 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa824 aa
Domain-by-domain annotation3 items
2 HATPase_c#2
350-441 aa · 92 aa · 11.2% of protein
Raw token
HATPase_c:350:0.00000000000117:441:108:1093 HisKA_3#3
700-770 aa · 71 aa · 8.6% of protein
Raw token
HisKA_3:700:0.00000944:770:71:68- Raw architecture: HisKA_3:247:5.65e-16:309:63:68#HATPase_c:350:0.00000000000117:441:108:109#HisKA_3:700:0.00000944:770:71:68
- Domain description: 2 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002838285::NZ_CP021386.1::G00005
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span963408-966704Genomic interval covered by the local TCS group.
Identifiers
Old locus tagNRBB04_0785RefSeq proteinWP_047928211.1
Context group ID
GCF_002838285::NZ_CP021386.1::G00005Context members
NRBB04_RS04165NRBB04_RS04170
Partner locus tags
NRBB04_RS04165NRBB04_RS04170
Partner old locus tags
NRBB04_0784NRBB04_0785
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_047928211.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagNRBB04_RS04170Primary locus identifier stored in the genes table.
Old locus tagNRBB04_0785Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP021386.1Sequence record reported by the local genomic context database.
Genomic interval964 236-966 704 nt2 469 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span963 408-966 704 ntGCF_002838285::NZ_CP021386.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002838285::NZ_CP021386.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP021386.1All displayed genes belong to this local TCS context.
Neighborhood span963 408-966 704 nt3 297 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
963 408 nt966 704 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
NRBB04_RS04165GCF_002838285#NRBB04_RS04165
RRNarL
963 408-964 214 nt · Reverse (-)
NRBB04_RS04170GCF_002838285#NRBB04_RS04170
HKClassicCurrent focus
964 236-966 704 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000158015#BIFBRE_RS05390Use this link to inspect the representative gene detail.
PFAM architectureDUF7134 + HisKA_3 + HATPase_c + DUF71344 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0525665
Simplified PFAM architecture for HKOC_0525665
PFAM domain coverage: 428 / 824 aa (51.9%)
1 aa824 aa
DUF7134HisKA_3HATPase_cDUF7134
- Simplified architecture: DUF7134 + HisKA_3 + HATPase_c + DUF7134
- Raw architecture: DUF7134[16-157] | HisKA_3[247-310] | HATPase_c[350-440] | DUF7134[488-618]
- Domain count: 4
- Matched identifier: HKOC_0525665
- Positioned domains: DUF7134 16-157 ; HisKA_3 247-310 ; HATPase_c 350-440 ; DUF7134 488-618
Cluster members and taxonomy
Representative gene: GCF_000158015#BIFBRE_RS05390
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 685 · GCF_002838285
AssemblyASM283828v1 · Complete Genomehaploid
Genome composition2 324 647 bp · 58,5% GCBifidobacterium breve
Signal transduction countsGenes 31 · HK 11 · RR 17CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key