1 HisKA_3#1
266-330 aa · 65 aa · 13.4% of protein
Raw token
HisKA_3:266:0.00000000000831:330:65:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
APS66_RS07380
Histidine kinase, Classic
Bifidobacterium bifidum · GCF_001595435
ClassHKTypeClassicLength486 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001595435#APS66_RS07380Stable P2CS identifier used across views.
GenomeGCF_001595435Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length486 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage151 / 486 aa (31.1%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa486 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
396-481 aa · 86 aa · 17.7% of protein
Raw token
HATPase_c:396:0.0000403:481:96:109- Raw architecture: HisKA_3:266:0.00000000000831:330:65:68#HATPase_c:396:0.0000403:481:96:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001595435::NZ_LKUR01000021.1::G00013
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span180863-183065Genomic interval covered by the local TCS group.
Identifiers
Old locus tagAPS66_08315RefSeq proteinWP_226803080.1
Context group ID
GCF_001595435::NZ_LKUR01000021.1::G00013Context members
APS66_RS07380APS66_RS07385
Partner locus tags
APS66_RS07380APS66_RS07385
Partner old locus tags
APS66_08315APS66_08320
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_226803080.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAPS66_RS07380Primary locus identifier stored in the genes table.
Old locus tagAPS66_08315Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_LKUR01000021.1Sequence record reported by the local genomic context database.
Genomic interval180 863-182 323 nt1 461 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span180 863-183 065 ntGCF_001595435::NZ_LKUR01000021.1::G00013
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001595435::NZ_LKUR01000021.1::G00013Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_LKUR01000021.1All displayed genes belong to this local TCS context.
Neighborhood span180 863-183 065 nt2 203 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
180 863 nt183 065 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
APS66_RS07380GCF_001595435#APS66_RS07380
HKClassicCurrent focus
180 863-182 323 nt · Forward (+)
APS66_RS07385GCF_001595435#APS66_RS07385
RRNarL
182 337-183 065 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001595435#APS66_RS07380The current gene is the representative for this cluster.
PFAM architectureHisKA_31 domain in the representative PFAM annotation.
PFAM architecture for HKOC_1568240
Simplified PFAM architecture for HKOC_1568240
PFAM domain coverage: 68 / 486 aa (14.0%)
1 aa486 aa
HisKA_3
- Simplified architecture: HisKA_3
- Raw architecture: HisKA_3[266-333]
- Domain count: 1
- Matched identifier: HKOC_1568240
- Positioned domains: HisKA_3 266-333
Cluster members and taxonomy
Representative gene: GCF_001595435#APS66_RS07380
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 681 · GCF_001595435
AssemblyASM159543v1 · Contighaploid
Genome composition2 285 457 bp · 62,5% GCBifidobacterium bifidum
Signal transduction countsGenes 30 · HK 13 · RR 16CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key