1 Response_reg#1
9-146 aa · 138 aa · 46.6% of protein
Raw token
Response_reg:9:1.07e-26:146:138:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
APC1472_RS03835
Response regulator NarL family
Bifidobacterium longum · GCF_002833115
ClassRRTypeNarLLength296 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002833115#APC1472_RS03835Stable P2CS identifier used across views.
GenomeGCF_002833115Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length296 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage196 / 296 aa (66.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 HTH_LUXR#2
233-290 aa · 58 aa · 19.6% of protein
Raw token
HTH_LUXR:233:7.3e-25:290:58:58- Raw architecture: Response_reg:9:1.07e-26:146:138:111#HTH_LUXR:233:7.3e-25:290:58:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002833115::NZ_PJEA01000010.1::G00005
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span83218-86589Genomic interval covered by the local TCS group.
Identifiers
Old locus tagAPC1472_0706RefSeq proteinWP_032742242.1
Context group ID
GCF_002833115::NZ_PJEA01000010.1::G00005Context members
APC1472_RS03835APC1472_RS03840
Partner locus tags
APC1472_RS03835APC1472_RS03840
Partner old locus tags
APC1472_0706APC1472_0707
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_032742242.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAPC1472_RS03835Primary locus identifier stored in the genes table.
Old locus tagAPC1472_0706Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_PJEA01000010.1Sequence record reported by the local genomic context database.
Genomic interval83 218-84 108 nt891 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span83 218-86 589 ntGCF_002833115::NZ_PJEA01000010.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002833115::NZ_PJEA01000010.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_PJEA01000010.1All displayed genes belong to this local TCS context.
Neighborhood span83 218-86 589 nt3 372 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
83 218 nt86 589 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
APC1472_RS03835GCF_002833115#APC1472_RS03835
RRNarLCurrent focus
83 218-84 108 nt · Reverse (-)
APC1472_RS03840GCF_002833115#APC1472_RS03840
HKClassic
84 130-86 589 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000219455#BLNIAS_RS05820Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0580194
Simplified PFAM architecture for RROC_0580194
PFAM domain coverage: 125 / 296 aa (42.2%)
1 aa296 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[9-77] | GerE[235-290]
- Domain count: 2
- Matched identifier: RROC_0580194
- Positioned domains: Response_reg 9-77 ; Response_reg 9-77 ; GerE 235-290 ; GerE 235-290
Cluster members and taxonomy
Representative gene: GCF_000219455#BLNIAS_RS05820
Displayed with 5 columns and 10 rows per page from the local display config.
Showing members 1 to 50 over 58 total members. Page 1 / 2.
GCF_000219455#BLNIAS_RS05820 (representative) | ||||
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 216 816 · GCF_002833115
AssemblyASM283311v1 · Contighaploid
Genome composition2 364 041 bp · 60,0% GCBifidobacterium longum
Signal transduction countsGenes 23 · HK 10 · RR 11CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key