1 Response_reg#1
9-146 aa · 138 aa · 46.6% of protein
Raw token
Response_reg:9:1.07e-26:146:138:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
APC1480_RS04165
Response regulator NarL family
Bifidobacterium longum · GCF_002833065
ClassRRTypeNarLLength296 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002833065#APC1480_RS04165Stable P2CS identifier used across views.
GenomeGCF_002833065Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length296 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage196 / 296 aa (66.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 HTH_LUXR#2
233-290 aa · 58 aa · 19.6% of protein
Raw token
HTH_LUXR:233:7.3e-25:290:58:58- Raw architecture: Response_reg:9:1.07e-26:146:138:111#HTH_LUXR:233:7.3e-25:290:58:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002833065::NZ_PJDV01000006.1::G00005
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span293980-297351Genomic interval covered by the local TCS group.
Identifiers
Old locus tagAPC1480_0779RefSeq proteinWP_032742242.1
Context group ID
GCF_002833065::NZ_PJDV01000006.1::G00005Context members
APC1480_RS04165APC1480_RS04170
Partner locus tags
APC1480_RS04165APC1480_RS04170
Partner old locus tags
APC1480_0779APC1480_0780
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_032742242.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAPC1480_RS04165Primary locus identifier stored in the genes table.
Old locus tagAPC1480_0779Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_PJDV01000006.1Sequence record reported by the local genomic context database.
Genomic interval293 980-294 870 nt891 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span293 980-297 351 ntGCF_002833065::NZ_PJDV01000006.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002833065::NZ_PJDV01000006.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_PJDV01000006.1All displayed genes belong to this local TCS context.
Neighborhood span293 980-297 351 nt3 372 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
293 980 nt297 351 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
APC1480_RS04165GCF_002833065#APC1480_RS04165
RRNarLCurrent focus
293 980-294 870 nt · Reverse (-)
APC1480_RS04170GCF_002833065#APC1480_RS04170
HKClassic
294 892-297 351 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000219455#BLNIAS_RS05820Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0580194
Simplified PFAM architecture for RROC_0580194
PFAM domain coverage: 125 / 296 aa (42.2%)
1 aa296 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[9-77] | GerE[235-290]
- Domain count: 2
- Matched identifier: RROC_0580194
- Positioned domains: Response_reg 9-77 ; Response_reg 9-77 ; GerE 235-290 ; GerE 235-290
Cluster members and taxonomy
Representative gene: GCF_000219455#BLNIAS_RS05820
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 216 816 · GCF_002833065
AssemblyASM283306v1 · Contighaploid
Genome composition2 477 750 bp · 60,0% GCBifidobacterium longum
Signal transduction countsGenes 23 · HK 10 · RR 11CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key