1 HisKA_3#1
244-302 aa · 59 aa · 7.2% of protein
Raw token
HisKA_3:244:7.21e-16:302:59:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
APC1472_RS03840
Histidine kinase, Classic
Bifidobacterium longum · GCF_002833115
ClassHKTypeClassicLength819 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002833115#APC1472_RS03840Stable P2CS identifier used across views.
GenomeGCF_002833115Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length819 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage224 / 819 aa (27.4%)Merged over positioned domains only.
Domain description2 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation3 items
2 HATPase_c#2
345-438 aa · 94 aa · 11.5% of protein
Raw token
HATPase_c:345:0.000000000000501:438:110:1093 HisKA_3#3
695-765 aa · 71 aa · 8.7% of protein
Raw token
HisKA_3:695:0.0000105:765:71:68- Raw architecture: HisKA_3:244:7.21e-16:302:59:68#HATPase_c:345:0.000000000000501:438:110:109#HisKA_3:695:0.0000105:765:71:68
- Domain description: 2 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002833115::NZ_PJEA01000010.1::G00005
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span83218-86589Genomic interval covered by the local TCS group.
Identifiers
Old locus tagAPC1472_0707RefSeq proteinWP_101027108.1
Context group ID
GCF_002833115::NZ_PJEA01000010.1::G00005Context members
APC1472_RS03835APC1472_RS03840
Partner locus tags
APC1472_RS03835APC1472_RS03840
Partner old locus tags
APC1472_0706APC1472_0707
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_101027108.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAPC1472_RS03840Primary locus identifier stored in the genes table.
Old locus tagAPC1472_0707Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_PJEA01000010.1Sequence record reported by the local genomic context database.
Genomic interval84 130-86 589 nt2 460 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span83 218-86 589 ntGCF_002833115::NZ_PJEA01000010.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002833115::NZ_PJEA01000010.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_PJEA01000010.1All displayed genes belong to this local TCS context.
Neighborhood span83 218-86 589 nt3 372 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
83 218 nt86 589 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
APC1472_RS03835GCF_002833115#APC1472_RS03835
RRNarL
83 218-84 108 nt · Reverse (-)
APC1472_RS03840GCF_002833115#APC1472_RS03840
HKClassicCurrent focus
84 130-86 589 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002833115#APC1472_RS03840The current gene is the representative for this cluster.
PFAM architectureDUF7134 + HisKA_3 + HATPase_c + DUF71344 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0530900
Simplified PFAM architecture for HKOC_0530900
PFAM domain coverage: 411 / 819 aa (50.2%)
1 aa819 aa
DUF7134HisKA_3HATPase_cDUF7134
- Simplified architecture: DUF7134 + HisKA_3 + HATPase_c + DUF7134
- Raw architecture: DUF7134[13-138] | HisKA_3[244-305] | HATPase_c[345-437] | DUF7134[485-614]
- Domain count: 4
- Matched identifier: HKOC_0530900
- Positioned domains: DUF7134 13-138 ; HisKA_3 244-305 ; HATPase_c 345-437 ; DUF7134 485-614
Cluster members and taxonomy
Representative gene: GCF_002833115#APC1472_RS03840
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 216 816 · GCF_002833115
AssemblyASM283311v1 · Contighaploid
Genome composition2 364 041 bp · 60,0% GCBifidobacterium longum
Signal transduction countsGenes 23 · HK 10 · RR 11CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key