1 Response_reg#1
17-131 aa · 115 aa · 52.3% of protein
Raw token
Response_reg:17:0.00000000000217:131:120:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CE153_RS02790
Response regulator NarL family
Bifidobacterium sp. N4G05 · GCF_002742445
ClassRRTypeNarLLength220 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_002742445#CE153_RS02790Stable P2CS identifier used across views.
GenomeGCF_002742445Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length220 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage172 / 220 aa (78.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 HTH_LUXR#2
159-215 aa · 57 aa · 25.9% of protein
Raw token
HTH_LUXR:159:0.00000000000000216:215:57:58- Raw architecture: Response_reg:17:0.00000000000217:131:120:111#HTH_LUXR:159:0.00000000000000216:215:57:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_002742445::NZ_NJNQ01000002.1::G00004
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span248730-249392Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCE153_02760RefSeq proteinWP_099595043.1
Context group ID
GCF_002742445::NZ_NJNQ01000002.1::G00004Context members
CE153_RS02790
Partner locus tags
CE153_RS02790
Partner old locus tags
CE153_02760
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_099595043.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCE153_RS02790Primary locus identifier stored in the genes table.
Old locus tagCE153_02760Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NJNQ01000002.1Sequence record reported by the local genomic context database.
Genomic interval248 730-249 392 nt663 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span248 730-249 392 ntGCF_002742445::NZ_NJNQ01000002.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002742445::NZ_NJNQ01000002.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NJNQ01000002.1All displayed genes belong to this local TCS context.
Neighborhood span248 730-249 392 nt663 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
248 730 nt249 392 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
CE153_RS02790GCF_002742445#CE153_RS02790
RRNarLCurrent focus
248 730-249 392 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002742445#CE153_RS02790The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1730577
Simplified PFAM architecture for RROC_1730577
PFAM domain coverage: 168 / 220 aa (76.4%)
1 aa220 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[17-130] | GerE[161-214]
- Domain count: 2
- Matched identifier: RROC_1730577
- Positioned domains: Response_reg 17-130 ; Response_reg 17-130 ; GerE 161-214 ; GerE 161-214
Cluster members and taxonomy
Representative gene: GCF_002742445#CE153_RS02790
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 013 020 · GCF_002742445
AssemblyASM274244v1 · Contighaploid
Genome composition2 069 141 bp · 56,0% GCBifidobacterium sp. N4G05
Signal transduction countsGenes 22 · HK 9 · RR 12CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key