1 HisKA#1
184-249 aa · 66 aa · 14.7% of protein
Raw token
HisKA:184:0.00000000000426:249:66:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CE153_RS01070
Histidine kinase, Classic
Bifidobacterium sp. N4G05 · GCF_002742445
ClassHKTypeClassicLength448 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002742445#CE153_RS01070Stable P2CS identifier used across views.
GenomeGCF_002742445Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length448 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage179 / 448 aa (40.0%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 HATPase_c#2
312-424 aa · 113 aa · 25.2% of protein
Raw token
HATPase_c:312:7.88e-29:424:113:109- Raw architecture: HisKA:184:0.00000000000426:249:66:64#HATPase_c:312:7.88e-29:424:113:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002742445::NZ_NJNQ01000001.1::G00002
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span221058-223173Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCE153_01070RefSeq proteinWP_099594855.1
Context group ID
GCF_002742445::NZ_NJNQ01000001.1::G00002Context members
CE153_RS01065CE153_RS01070
Partner locus tags
CE153_RS01065CE153_RS01070
Partner old locus tags
CE153_01065CE153_01070
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_099594855.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCE153_RS01070Primary locus identifier stored in the genes table.
Old locus tagCE153_01070Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NJNQ01000001.1Sequence record reported by the local genomic context database.
Genomic interval221 827-223 173 nt1 347 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span221 058-223 173 ntGCF_002742445::NZ_NJNQ01000001.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002742445::NZ_NJNQ01000001.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NJNQ01000001.1All displayed genes belong to this local TCS context.
Neighborhood span221 058-223 173 nt2 116 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
221 058 nt223 173 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CE153_RS01065GCF_002742445#CE153_RS01065
RROmpR
221 058-221 762 nt · Reverse (-)
CE153_RS01070GCF_002742445#CE153_RS01070
HKClassicCurrent focus
221 827-223 173 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002742445#CE153_RS01070The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1990105
Simplified PFAM architecture for HKOC_1990105
PFAM domain coverage: 177 / 448 aa (39.5%)
1 aa448 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[184-249] | HATPase_c[313-423]
- Domain count: 2
- Matched identifier: HKOC_1990105
- Positioned domains: HisKA 184-249 ; HATPase_c 313-423
Cluster members and taxonomy
Representative gene: GCF_002742445#CE153_RS01070
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 013 020 · GCF_002742445
AssemblyASM274244v1 · Contighaploid
Genome composition2 069 141 bp · 56,0% GCBifidobacterium sp. N4G05
Signal transduction countsGenes 22 · HK 9 · RR 12CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key