1 HisKA#1
168-227 aa · 60 aa · 15.9% of protein
Raw token
HisKA:168:0.000000000000427:227:61:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
COE82_RS02550
Histidine kinase, Classic
Bacillus wiedmannii · GCF_002579865
ClassHKTypeClassicLength377 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_002579865#COE82_RS02550Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length377 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage165 / 377 aa (43.8%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa377 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
271-375 aa · 105 aa · 27.9% of protein
Raw token
HATPase_c:271:9.74e-21:375:109:109- Raw architecture: HisKA:168:0.000000000000427:227:61:64#HATPase_c:271:9.74e-21:375:109:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_002579865::NZ_NURD01000003.1::G00062
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span228247-229380Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCOE82_02550RefSeq proteinWP_000425101.1
Context group ID
GCF_002579865::NZ_NURD01000003.1::G00062Context members
COE82_RS02550
Partner locus tags
COE82_RS02550
Partner old locus tags
COE82_02550
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_000425101.1Primary protein accession used for annex mappings.
UniProt accessionA0A1C4D2Z0Primary UniProt accession resolved in the annex database.
UniProt IDA0A1C4D2Z0_BACTUDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCOE82_RS02550Primary locus identifier stored in the genes table.
Old locus tagCOE82_02550Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NURD01000003.1Sequence record reported by the local genomic context database.
Genomic interval228 247-229 380 nt1 134 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span228 247-229 380 ntGCF_002579865::NZ_NURD01000003.1::G00062
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002579865::NZ_NURD01000003.1::G00062Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NURD01000003.1All displayed genes belong to this local TCS context.
Neighborhood span228 247-229 380 nt1 134 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
228 247 nt229 380 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
COE82_RS02550GCF_002579865#COE82_RS02550
HKClassicCurrent focus
228 247-229 380 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000160955#BCERE0006_RS10550Use this link to inspect the representative gene detail.
PFAM architectureHisK_N + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2634079
Simplified PFAM architecture for HKOC_2634079
PFAM domain coverage: 291 / 377 aa (77.2%)
1 aa377 aa
HisK_NHisKAHATPase_c
- Simplified architecture: HisK_N + HisKA + HATPase_c
- Raw architecture: HisK_N[16-144] | HisKA[168-227] | HATPase_c[274-375]
- Domain count: 3
- Matched identifier: HKOC_2634079
- Positioned domains: HisK_N 16-144 ; HisKA 168-227 ; HATPase_c 274-375
Cluster members and taxonomy
Representative gene: GCF_000160955#BCERE0006_RS10550
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 890 302 · GCF_002579865
AssemblyASM257986v1 · Scaffoldhaploid
Genome composition5 475 240 bp · 35,0% GCBacillus wiedmannii
Signal transduction countsGenes 116 · HK 61 · RR 55CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key