1 HisKA#1
168-227 aa · 60 aa · 15.9% of protein
Raw token
HisKA:168:0.000000000000427:227:61:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BCERE0006_RS10550
Histidine kinase, Classic
Bacillus wiedmannii · GCF_000160955
ClassHKTypeClassicLength377 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000160955#BCERE0006_RS10550Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length377 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage165 / 377 aa (43.8%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa377 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
271-375 aa · 105 aa · 27.9% of protein
Raw token
HATPase_c:271:9.74e-21:375:109:109- Raw architecture: HisKA:168:0.000000000000427:227:61:64#HATPase_c:271:9.74e-21:375:109:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000160955::NZ_CM000718.1::G00032
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span2123641-2124774Genomic interval covered by the local TCS group.
Identifiers
Old locus tagbcere0006_20920RefSeq proteinWP_000425101.1
Context group ID
GCF_000160955::NZ_CM000718.1::G00032Context members
BCERE0006_RS10550
Partner locus tags
BCERE0006_RS10550
Partner old locus tags
bcere0006_20920
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_000425101.1Primary protein accession used for annex mappings.
UniProt accessionA0A1C4D2Z0Primary UniProt accession resolved in the annex database.
UniProt IDA0A1C4D2Z0_BACTUDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBCERE0006_RS10550Primary locus identifier stored in the genes table.
Old locus tagbcere0006_20920Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CM000718.1Sequence record reported by the local genomic context database.
Genomic interval2 123 641-2 124 774 nt1 134 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span2 123 641-2 124 774 ntGCF_000160955::NZ_CM000718.1::G00032
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000160955::NZ_CM000718.1::G00032Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CM000718.1All displayed genes belong to this local TCS context.
Neighborhood span2 123 641-2 124 774 nt1 134 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 123 641 nt2 124 774 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
BCERE0006_RS10550GCF_000160955#BCERE0006_RS10550
HKClassicCurrent focus
2 123 641-2 124 774 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000160955#BCERE0006_RS10550The current gene is the representative for this cluster.
PFAM architectureHisK_N + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2634079
Simplified PFAM architecture for HKOC_2634079
PFAM domain coverage: 291 / 377 aa (77.2%)
1 aa377 aa
HisK_NHisKAHATPase_c
- Simplified architecture: HisK_N + HisKA + HATPase_c
- Raw architecture: HisK_N[16-144] | HisKA[168-227] | HATPase_c[274-375]
- Domain count: 3
- Matched identifier: HKOC_2634079
- Positioned domains: HisK_N 16-144 ; HisKA 168-227 ; HATPase_c 274-375
Cluster members and taxonomy
Representative gene: GCF_000160955#BCERE0006_RS10550
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 890 302 · GCF_000160955
AssemblyASM16095v1 · Chromosomehaploid
Genome composition5 547 057 bp · 35,0% GCBacillus wiedmannii
Signal transduction countsGenes 113 · HK 59 · RR 54CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key