1 HAMP#1
168-234 aa · 67 aa · 14.4% of protein
Raw token
HAMP:168:0.00000000000000194:234:67:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
COE82_RS03405
Histidine kinase, Classic
Bacillus wiedmannii · GCF_002579865
ClassHKTypeClassicLength466 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002579865#COE82_RS03405Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length466 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage245 / 466 aa (52.6%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa466 aa
Domain-by-domain annotation3 items
2 HisKA#2
238-304 aa · 67 aa · 14.4% of protein
Raw token
HisKA:238:2.01e-18:304:67:643 HATPase_c#3
350-460 aa · 111 aa · 23.8% of protein
Raw token
HATPase_c:350:8.46e-32:460:111:109- Raw architecture: HAMP:168:0.00000000000000194:234:67:69#HisKA:238:2.01e-18:304:67:64#HATPase_c:350:8.46e-32:460:111:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002579865::NZ_NURD01000006.1::G00064
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span27284-29359Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCOE82_03405RefSeq proteinWP_000494801.1
Context group ID
GCF_002579865::NZ_NURD01000006.1::G00064Context members
COE82_RS03400COE82_RS03405
Partner locus tags
COE82_RS03400COE82_RS03405
Partner old locus tags
COE82_03400COE82_03405
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_000494801.1Primary protein accession used for annex mappings.
UniProt accessionA0A6H0TB88Primary UniProt accession resolved in the annex database.
UniProt IDA0A6H0TB88_BACTUDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCOE82_RS03405Primary locus identifier stored in the genes table.
Old locus tagCOE82_03405Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NURD01000006.1Sequence record reported by the local genomic context database.
Genomic interval27 959-29 359 nt1 401 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span27 284-29 359 ntGCF_002579865::NZ_NURD01000006.1::G00064
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002579865::NZ_NURD01000006.1::G00064Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NURD01000006.1All displayed genes belong to this local TCS context.
Neighborhood span27 284-29 359 nt2 076 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
27 284 nt29 359 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
COE82_RS03400GCF_002579865#COE82_RS03400
RROmpR
27 284-27 955 nt · Forward (+)
COE82_RS03405GCF_002579865#COE82_RS03405
HKClassicCurrent focus
27 959-29 359 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000291495#ICW_RS22305Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1761963
Simplified PFAM architecture for HKOC_1761963
PFAM domain coverage: 223 / 466 aa (47.9%)
1 aa466 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[186-233] | HisKA[239-303] | HATPase_c[350-459]
- Domain count: 3
- Matched identifier: HKOC_1761963
- Positioned domains: HAMP 186-233 ; HisKA 239-303 ; HATPase_c 350-459
Cluster members and taxonomy
Representative gene: GCF_000291495#ICW_RS22305
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 890 302 · GCF_002579865
AssemblyASM257986v1 · Scaffoldhaploid
Genome composition5 475 240 bp · 35,0% GCBacillus wiedmannii
Signal transduction countsGenes 116 · HK 61 · RR 55CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key