1 Response_reg#1
4-115 aa · 112 aa · 52.6% of protein
Raw token
Response_reg:4:3.38e-18:115:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
COJ51_RS15855
Response regulator NarL family
Bacillus thuringiensis · GCF_002566545
ClassRRTypeNarLLength213 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002566545#COJ51_RS15855Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length213 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage169 / 213 aa (79.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa213 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
147-203 aa · 57 aa · 26.8% of protein
Raw token
HTH_LUXR:147:0.0000000000000037:203:57:58- Raw architecture: Response_reg:4:3.38e-18:115:112:111#HTH_LUXR:147:0.0000000000000037:203:57:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002566545::NZ_NUYC01000187.1::G00018
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span34043-37006Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCOJ51_15855RefSeq proteinWP_000621763.1
Context group ID
GCF_002566545::NZ_NUYC01000187.1::G00018Context members
COJ51_RS15850COJ51_RS15855
Partner locus tags
COJ51_RS15850COJ51_RS15855
Partner old locus tags
COJ51_15850COJ51_15855
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_000621763.1Primary protein accession used for annex mappings.
UniProt accessionA0AAN4HIN9Primary UniProt accession resolved in the annex database.
UniProt IDA0AAN4HIN9_BACTUDisplay identifier provided by UniProt.
GO / PubMed4 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCOJ51_RS15855Primary locus identifier stored in the genes table.
Old locus tagCOJ51_15855Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NUYC01000187.1Sequence record reported by the local genomic context database.
Genomic interval36 365-37 006 nt642 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span34 043-37 006 ntGCF_002566545::NZ_NUYC01000187.1::G00018
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002566545::NZ_NUYC01000187.1::G00018Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NUYC01000187.1All displayed genes belong to this local TCS context.
Neighborhood span34 043-37 006 nt2 964 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
34 043 nt37 006 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
COJ51_RS15850GCF_002566545#COJ51_RS15850
HKClassic
34 043-36 361 nt · Forward (+)
COJ51_RS15855GCF_002566545#COJ51_RS15855
RRNarLCurrent focus
36 365-37 006 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000161495#BTHUR0002_RS24675Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1962724
Simplified PFAM architecture for RROC_1962724
PFAM domain coverage: 166 / 213 aa (77.9%)
1 aa213 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[4-115] | GerE[148-201]
- Domain count: 2
- Matched identifier: RROC_1962724
- Positioned domains: Response_reg 4-115 ; Response_reg 4-115 ; GerE 148-201 ; GerE 148-201
Cluster members and taxonomy
Representative gene: GCF_000161495#BTHUR0002_RS24675
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 428 · GCF_002566545
AssemblyASM256654v1 · Scaffoldhaploid
Genome composition5 776 026 bp · 35,0% GCBacillus thuringiensis
Signal transduction countsGenes 116 · HK 62 · RR 53CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key