1 Response_reg#1
4-115 aa · 112 aa · 52.6% of protein
Raw token
Response_reg:4:3.38e-18:115:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BTHUR0002_RS24675
Response regulator NarL family
Bacillus thuringiensis Bt407 · GCF_000161495
ClassRRTypeNarLLength213 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000161495#BTHUR0002_RS24675Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length213 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage169 / 213 aa (79.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa213 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
147-203 aa · 57 aa · 26.8% of protein
Raw token
HTH_LUXR:147:0.0000000000000037:203:57:58- Raw architecture: Response_reg:4:3.38e-18:115:112:111#HTH_LUXR:147:0.0000000000000037:203:57:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000161495::NZ_CM000747.1::G00052
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span4805808-4808600Genomic interval covered by the local TCS group.
Identifiers
Old locus tagbthur0002_50040RefSeq proteinWP_000621763.1
Context group ID
GCF_000161495::NZ_CM000747.1::G00052Context members
BTHUR0002_RS24675BTHUR0002_RS24680
Partner locus tags
BTHUR0002_RS24675BTHUR0002_RS24680
Partner old locus tags
bthur0002_50040bthur0002_50030
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_000621763.1Primary protein accession used for annex mappings.
UniProt accessionA0AAN4HIN9Primary UniProt accession resolved in the annex database.
UniProt IDA0AAN4HIN9_BACTUDisplay identifier provided by UniProt.
GO / PubMed4 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBTHUR0002_RS24675Primary locus identifier stored in the genes table.
Old locus tagbthur0002_50040Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CM000747.1Sequence record reported by the local genomic context database.
Genomic interval4 805 808-4 806 449 nt642 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span4 805 808-4 808 600 ntGCF_000161495::NZ_CM000747.1::G00052
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000161495::NZ_CM000747.1::G00052Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CM000747.1All displayed genes belong to this local TCS context.
Neighborhood span4 805 808-4 808 600 nt2 793 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
4 805 808 nt4 808 600 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BTHUR0002_RS24675GCF_000161495#BTHUR0002_RS24675
RRNarLCurrent focus
4 805 808-4 806 449 nt · Reverse (-)
BTHUR0002_RS24680GCF_000161495#BTHUR0002_RS24680
HKClassic
4 806 453-4 808 600 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000161495#BTHUR0002_RS24675The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1962724
Simplified PFAM architecture for RROC_1962724
PFAM domain coverage: 166 / 213 aa (77.9%)
1 aa213 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[4-115] | GerE[148-201]
- Domain count: 2
- Matched identifier: RROC_1962724
- Positioned domains: Response_reg 4-115 ; Response_reg 4-115 ; GerE 148-201 ; GerE 148-201
Cluster members and taxonomy
Representative gene: GCF_000161495#BTHUR0002_RS24675
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 527 021 · GCF_000161495
AssemblyASM16149v1 · Chromosomehaploid
Genome composition6 026 843 bp · 35,0% GCBacillus thuringiensis Bt407
Signal transduction countsGenes 106 · HK 57 · RR 49CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key