1 HAMP#1
310-377 aa · 68 aa · 11.0% of protein
Raw token
HAMP:310:0.000000000000299:377:68:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
COJ51_RS02545
Histidine kinase, Classic
Bacillus thuringiensis · GCF_002566545
ClassHKTypeClassicLength616 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002566545#COJ51_RS02545Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length616 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage244 / 616 aa (39.6%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa616 aa
Domain-by-domain annotation3 items
2 HisKA#2
397-461 aa · 65 aa · 10.6% of protein
Raw token
HisKA:397:0.0000000000000183:461:65:643 HATPase_c#3
505-615 aa · 111 aa · 18.0% of protein
Raw token
HATPase_c:505:6.01e-21:615:112:109- Raw architecture: HAMP:310:0.000000000000299:377:68:69#HisKA:397:0.0000000000000183:461:65:64#HATPase_c:505:6.01e-21:615:112:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002566545::NZ_NUYC01000027.1::G00056
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span16969-19505Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCOJ51_02545RefSeq proteinWP_098564586.1
Context group ID
GCF_002566545::NZ_NUYC01000027.1::G00056Context members
COJ51_RS02540COJ51_RS02545
Partner locus tags
COJ51_RS02540COJ51_RS02545
Partner old locus tags
COJ51_02540COJ51_02545
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_098564586.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCOJ51_RS02545Primary locus identifier stored in the genes table.
Old locus tagCOJ51_02545Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NUYC01000027.1Sequence record reported by the local genomic context database.
Genomic interval17 655-19 505 nt1 851 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span16 969-19 505 ntGCF_002566545::NZ_NUYC01000027.1::G00056
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002566545::NZ_NUYC01000027.1::G00056Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NUYC01000027.1All displayed genes belong to this local TCS context.
Neighborhood span16 969-19 505 nt2 537 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
16 969 nt19 505 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
COJ51_RS02540GCF_002566545#COJ51_RS02540
RROmpR
16 969-17 658 nt · Forward (+)
COJ51_RS02545GCF_002566545#COJ51_RS02545
HKClassicCurrent focus
17 655-19 505 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002566545#COJ51_RS02545The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0985966
Simplified PFAM architecture for HKOC_0985966
PFAM domain coverage: 224 / 616 aa (36.4%)
1 aa616 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[328-377] | HisKA[397-461] | HATPase_c[507-615]
- Domain count: 3
- Matched identifier: HKOC_0985966
- Positioned domains: HAMP 328-377 ; HisKA 397-461 ; HATPase_c 507-615
Cluster members and taxonomy
Representative gene: GCF_002566545#COJ51_RS02545
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 428 · GCF_002566545
AssemblyASM256654v1 · Scaffoldhaploid
Genome composition5 776 026 bp · 35,0% GCBacillus thuringiensis
Signal transduction countsGenes 116 · HK 62 · RR 53CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key