1 Response_reg#1
5-115 aa · 111 aa · 35.4% of protein
Raw token
Response_reg:5:6.37e-21:115:114:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DL97_RS08545
Response regulator, unclassified
Bacillus sp. YF23 · GCF_002564205
ClassRRTypeunclassifiedLength314 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_002564205#DL97_RS08545Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regYcbB
Protein length314 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage249 / 314 aa (79.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 YcbBSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa314 aa
Domain-by-domain annotation2 items
2 YcbB#2
165-302 aa · 138 aa · 43.9% of protein
Raw token
YcbB:165:2.5e-61:302:138:131- Raw architecture: Response_reg:5:6.37e-21:115:114:111#YcbB:165:2.5e-61:302:138:131
- Domain description: 1 Response_reg,1 YcbB
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_002564205::NZ_PDJR01000001.1::G00023
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span1635229-1636173Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDL97_1663RefSeq proteinWP_016512825.1
Context group ID
GCF_002564205::NZ_PDJR01000001.1::G00023Context members
DL97_RS08545
Partner locus tags
DL97_RS08545
Partner old locus tags
DL97_1663
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_016512825.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDL97_RS08545Primary locus identifier stored in the genes table.
Old locus tagDL97_1663Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_PDJR01000001.1Sequence record reported by the local genomic context database.
Genomic interval1 635 229-1 636 173 nt945 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 635 229-1 636 173 ntGCF_002564205::NZ_PDJR01000001.1::G00023
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002564205::NZ_PDJR01000001.1::G00023Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_PDJR01000001.1All displayed genes belong to this local TCS context.
Neighborhood span1 635 229-1 636 173 nt945 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 635 229 nt1 636 173 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DL97_RS08545GCF_002564205#DL97_RS08545
RRunclassifiedCurrent focus
1 635 229-1 636 173 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000412975#ICA_RS12100Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + YcbB2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0541995
Simplified PFAM architecture for RROC_0541995
PFAM domain coverage: 248 / 314 aa (79.0%)
1 aa314 aa
Response_regYcbB
- Simplified architecture: Response_reg + YcbB
- Raw architecture: Response_reg[4-114] | YcbB[166-302]
- Domain count: 2
- Matched identifier: RROC_0541995
- Positioned domains: Response_reg 4-114 ; Response_reg 4-114 ; YcbB 166-302 ; YcbB 166-302
Cluster members and taxonomy
Representative gene: GCF_000412975#ICA_RS12100
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 691 698 · GCF_002564205
AssemblyASM256420v1 · Contighaploid
Genome composition5 820 595 bp · 35,0% GCBacillus sp. YF23
Signal transduction countsGenes 117 · HK 63 · RR 54CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key