1 HisKA_3#1
568-631 aa · 64 aa · 8.3% of protein
Raw token
HisKA_3:568:0.0000025:631:73:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DL97_RS00870
Histidine kinase, Classic
Bacillus sp. YF23 · GCF_002564205
ClassHKTypeClassicLength767 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002564205#DL97_RS00870Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length767 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage159 / 767 aa (20.7%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa767 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
673-767 aa · 95 aa · 12.4% of protein
Raw token
HATPase_c:673:0.0000000000000277:767:106:109- Raw architecture: HisKA_3:568:0.0000025:631:73:68#HATPase_c:673:0.0000000000000277:767:106:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002564205::NZ_PDJR01000001.1::G00002
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span144805-147800Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDL97_0165RefSeq proteinWP_016513648.1
Context group ID
GCF_002564205::NZ_PDJR01000001.1::G00002Context members
DL97_RS00870DL97_RS00875
Partner locus tags
DL97_RS00870DL97_RS00875
Partner old locus tags
DL97_0165DL97_0166
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_016513648.1Primary protein accession used for annex mappings.
UniProt accessionA0A9X6TXE4Primary UniProt accession resolved in the annex database.
UniProt IDA0A9X6TXE4_BACTUDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDL97_RS00870Primary locus identifier stored in the genes table.
Old locus tagDL97_0165Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_PDJR01000001.1Sequence record reported by the local genomic context database.
Genomic interval144 805-147 108 nt2 304 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span144 805-147 800 ntGCF_002564205::NZ_PDJR01000001.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002564205::NZ_PDJR01000001.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_PDJR01000001.1All displayed genes belong to this local TCS context.
Neighborhood span144 805-147 800 nt2 996 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
144 805 nt147 800 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DL97_RS00870GCF_002564205#DL97_RS00870
HKClassicCurrent focus
144 805-147 108 nt · Forward (+)
DL97_RS00875GCF_002564205#DL97_RS00875
RRNarL
147 144-147 800 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000412975#ICA_RS27370Use this link to inspect the representative gene detail.
PFAM architectureHATPase_c1 domain in the representative PFAM annotation.
PFAM architecture for HKOC_0627140
Simplified PFAM architecture for HKOC_0627140
PFAM domain coverage: 93 / 767 aa (12.1%)
1 aa767 aa
HATPase_c
- Simplified architecture: HATPase_c
- Raw architecture: HATPase_c[673-765]
- Domain count: 1
- Matched identifier: HKOC_0627140
- Positioned domains: HATPase_c 673-765
Cluster members and taxonomy
Representative gene: GCF_000412975#ICA_RS27370
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 691 698 · GCF_002564205
AssemblyASM256420v1 · Contighaploid
Genome composition5 820 595 bp · 35,0% GCBacillus sp. YF23
Signal transduction countsGenes 117 · HK 63 · RR 54CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key