1 Response_reg#1
6-115 aa · 110 aa · 47.4% of protein
Raw token
Response_reg:6:4.53e-40:115:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DL97_RS00685
Response regulator OmpR family
Bacillus sp. YF23 · GCF_002564205
ClassRRTypeOmpRLength232 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002564205#DL97_RS00685Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length232 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage188 / 232 aa (81.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa232 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
153-230 aa · 78 aa · 33.6% of protein
Raw token
Trans_reg_C:153:8.2e-32:230:78:77- Raw architecture: Response_reg:6:4.53e-40:115:111:111#Trans_reg_C:153:8.2e-32:230:78:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002564205::NZ_PDJR01000001.1::G00001
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span108511-110287Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDL97_0132RefSeq proteinWP_000802753.1
Context group ID
GCF_002564205::NZ_PDJR01000001.1::G00001Context members
DL97_RS00685DL97_RS00690
Partner locus tags
DL97_RS00685DL97_RS00690
Partner old locus tags
DL97_0132DL97_0133
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_000802753.1Primary protein accession used for annex mappings.
UniProt accessionA0A9X6TWN4Primary UniProt accession resolved in the annex database.
UniProt IDA0A9X6TWN4_BACTUDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDL97_RS00685Primary locus identifier stored in the genes table.
Old locus tagDL97_0132Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_PDJR01000001.1Sequence record reported by the local genomic context database.
Genomic interval108 511-109 209 nt699 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span108 511-110 287 ntGCF_002564205::NZ_PDJR01000001.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002564205::NZ_PDJR01000001.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_PDJR01000001.1All displayed genes belong to this local TCS context.
Neighborhood span108 511-110 287 nt1 777 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
108 511 nt110 287 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DL97_RS00685GCF_002564205#DL97_RS00685
RROmpRCurrent focus
108 511-109 209 nt · Forward (+)
DL97_RS00690GCF_002564205#DL97_RS00690
HKClassic
109 202-110 287 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000291035#ICE_RS00685Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1120661
Simplified PFAM architecture for RROC_1120661
PFAM domain coverage: 188 / 232 aa (81.0%)
1 aa232 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[6-115] | Trans_reg_C[153-230]
- Domain count: 2
- Matched identifier: RROC_1120661
- Positioned domains: Response_reg 6-115 ; Response_reg 6-115 ; Trans_reg_C 153-230 ; Trans_reg_C 153-230
Cluster members and taxonomy
Representative gene: GCF_000291035#ICE_RS00685
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 691 698 · GCF_002564205
AssemblyASM256420v1 · Contighaploid
Genome composition5 820 595 bp · 35,0% GCBacillus sp. YF23
Signal transduction countsGenes 117 · HK 63 · RR 54CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key