1 Hpt#1
4-96 aa · 93 aa · 13.8% of protein
Raw token
Hpt:4:4.11e-17:96:93:84P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DL97_RS04610
Histidine kinase, CheA
Bacillus sp. YF23 · GCF_002564205
ClassHKTypeCheALength672 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002564205#DL97_RS04610Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HptH-kinase_dimHATPase_cCheW
Protein length672 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage426 / 672 aa (63.4%)Merged over positioned domains only.
Domain description1 Hpt,1 H-kinase_dim,1 HATPase_c,1 CheWSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa672 aa
Domain-by-domain annotation4 items
2 H-kinase_dim#2
289-348 aa · 60 aa · 8.9% of protein
Raw token
H-kinase_dim:289:0.00000000254:348:67:673 HATPase_c#3
396-535 aa · 140 aa · 20.8% of protein
Raw token
HATPase_c:396:1.7e-17:535:140:1094 CheW#4
540-672 aa · 133 aa · 19.8% of protein
Raw token
CheW:540:1.71e-21:672:139:138- Raw architecture: Hpt:4:4.11e-17:96:93:84#H-kinase_dim:289:0.00000000254:348:67:67#HATPase_c:396:1.7e-17:535:140:109#CheW:540:1.71e-21:672:139:138
- Domain description: 1 Hpt,1 H-kinase_dim,1 HATPase_c,1 CheW
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002564205::NZ_PDJR01000001.1::G00014
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span842228-844744Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDL97_0889RefSeq proteinWP_001192625.1
Context group ID
GCF_002564205::NZ_PDJR01000001.1::G00014Context members
DL97_RS04605DL97_RS04610
Partner locus tags
DL97_RS04605DL97_RS04610
Partner old locus tags
DL97_0888DL97_0889
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_001192625.1Primary protein accession used for annex mappings.
UniProt accessionA0A9X6U1L7Primary UniProt accession resolved in the annex database.
UniProt IDA0A9X6U1L7_BACTUDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDL97_RS04610Primary locus identifier stored in the genes table.
Old locus tagDL97_0889Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_PDJR01000001.1Sequence record reported by the local genomic context database.
Genomic interval842 726-844 744 nt2 019 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span842 228-844 744 ntGCF_002564205::NZ_PDJR01000001.1::G00014
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002564205::NZ_PDJR01000001.1::G00014Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_PDJR01000001.1All displayed genes belong to this local TCS context.
Neighborhood span842 228-844 744 nt2 517 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
842 228 nt844 744 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DL97_RS04605GCF_002564205#DL97_RS04605
RRCheY
842 228-842 596 nt · Forward (+)
DL97_RS04610GCF_002564205#DL97_RS04610
HKCheACurrent focus
842 726-844 744 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000291035#ICE_RS04370Use this link to inspect the representative gene detail.
PFAM architectureHpt + P2 + H-kinase_dim + HATPase_c + CheW5 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0838984
Simplified PFAM architecture for HKOC_0838984
PFAM domain coverage: 509 / 672 aa (75.7%)
1 aa672 aa
HptP2H-kinase_dimHATPase_cCheW
- Simplified architecture: Hpt + P2 + H-kinase_dim + HATPase_c + CheW
- Raw architecture: Hpt[4-103] | P2[148-225] | H-kinase_dim[289-347] | HATPase_c[396-535] | CheW[541-672]
- Domain count: 5
- Matched identifier: HKOC_0838984
- Positioned domains: Hpt 4-103 ; P2 148-225 ; H-kinase_dim 289-347 ; HATPase_c 396-535 ; CheW 541-672
Cluster members and taxonomy
Representative gene: GCF_000291035#ICE_RS04370
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 691 698 · GCF_002564205
AssemblyASM256420v1 · Contighaploid
Genome composition5 820 595 bp · 35,0% GCBacillus sp. YF23
Signal transduction countsGenes 117 · HK 63 · RR 54CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key