1 Response_reg#1
4-115 aa · 112 aa · 51.4% of protein
Raw token
Response_reg:4:7.18e-20:115:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DL97_RS00875
Response regulator NarL family
Bacillus sp. YF23 · GCF_002564205
ClassRRTypeNarLLength218 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002564205#DL97_RS00875Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length218 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage168 / 218 aa (77.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa218 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
152-207 aa · 56 aa · 25.7% of protein
Raw token
HTH_LUXR:152:0.000000000000069:207:56:58- Raw architecture: Response_reg:4:7.18e-20:115:112:111#HTH_LUXR:152:0.000000000000069:207:56:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002564205::NZ_PDJR01000001.1::G00002
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span144805-147800Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDL97_0166RefSeq proteinWP_000626498.1
Context group ID
GCF_002564205::NZ_PDJR01000001.1::G00002Context members
DL97_RS00870DL97_RS00875
Partner locus tags
DL97_RS00870DL97_RS00875
Partner old locus tags
DL97_0165DL97_0166
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_000626498.1Primary protein accession used for annex mappings.
UniProt accessionA0A9X6IUQ0Primary UniProt accession resolved in the annex database.
UniProt IDA0A9X6IUQ0_BACUDDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDL97_RS00875Primary locus identifier stored in the genes table.
Old locus tagDL97_0166Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_PDJR01000001.1Sequence record reported by the local genomic context database.
Genomic interval147 144-147 800 nt657 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span144 805-147 800 ntGCF_002564205::NZ_PDJR01000001.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002564205::NZ_PDJR01000001.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_PDJR01000001.1All displayed genes belong to this local TCS context.
Neighborhood span144 805-147 800 nt2 996 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
144 805 nt147 800 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DL97_RS00870GCF_002564205#DL97_RS00870
HKClassic
144 805-147 108 nt · Forward (+)
DL97_RS00875GCF_002564205#DL97_RS00875
RRNarLCurrent focus
147 144-147 800 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000007825#BC_RS04420Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1811982
Simplified PFAM architecture for RROC_1811982
PFAM domain coverage: 167 / 218 aa (76.6%)
1 aa218 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[4-115] | GerE[153-207]
- Domain count: 2
- Matched identifier: RROC_1811982
- Positioned domains: Response_reg 4-115 ; Response_reg 4-115 ; GerE 153-207 ; GerE 153-207
Cluster members and taxonomy
Representative gene: GCF_000007825#BC_RS04420
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 691 698 · GCF_002564205
AssemblyASM256420v1 · Contighaploid
Genome composition5 820 595 bp · 35,0% GCBacillus sp. YF23
Signal transduction countsGenes 117 · HK 63 · RR 54CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key