1 HAMP#1
186-253 aa · 68 aa · 14.1% of protein
Raw token
HAMP:186:0.000000000049:253:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CON55_RS05385
Histidine kinase, Classic
Bacillus toyonensis · GCF_002552055
ClassHKTypeClassicLength481 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002552055#CON55_RS05385Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length481 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage245 / 481 aa (50.9%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa481 aa
Domain-by-domain annotation3 items
2 HisKA#2
259-324 aa · 66 aa · 13.7% of protein
Raw token
HisKA:259:0.000000000000115:324:66:643 HATPase_c#3
371-481 aa · 111 aa · 23.1% of protein
Raw token
HATPase_c:371:7.63e-33:481:111:109- Raw architecture: HAMP:186:0.000000000049:253:70:69#HisKA:259:0.000000000000115:324:66:64#HATPase_c:371:7.63e-33:481:111:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002552055::NZ_NVNX01000008.1::G00069
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span53470-55651Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCON55_05390RefSeq proteinWP_000041012.1
Context group ID
GCF_002552055::NZ_NVNX01000008.1::G00069Context members
CON55_RS05385CON55_RS05390
Partner locus tags
CON55_RS05385CON55_RS05390
Partner old locus tags
CON55_05390CON55_05395
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_000041012.1Primary protein accession used for annex mappings.
UniProt accessionA0AB36TCW7Primary UniProt accession resolved in the annex database.
UniProt IDA0AB36TCW7_9BACIDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCON55_RS05385Primary locus identifier stored in the genes table.
Old locus tagCON55_05390Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NVNX01000008.1Sequence record reported by the local genomic context database.
Genomic interval53 470-54 915 nt1 446 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span53 470-55 651 ntGCF_002552055::NZ_NVNX01000008.1::G00069
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002552055::NZ_NVNX01000008.1::G00069Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NVNX01000008.1All displayed genes belong to this local TCS context.
Neighborhood span53 470-55 651 nt2 182 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
53 470 nt55 651 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CON55_RS05385GCF_002552055#CON55_RS05385
HKClassicCurrent focus
53 470-54 915 nt · Reverse (-)
CON55_RS05390GCF_002552055#CON55_RS05390
RROmpR
54 980-55 651 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002552055#CON55_RS05385The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1612768
Simplified PFAM architecture for HKOC_1612768
PFAM domain coverage: 225 / 481 aa (46.8%)
1 aa481 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[204-253] | HisKA[260-324] | HATPase_c[371-480]
- Domain count: 3
- Matched identifier: HKOC_1612768
- Positioned domains: HAMP 204-253 ; HisKA 260-324 ; HATPase_c 371-480
Cluster members and taxonomy
Representative gene: GCF_002552055#CON55_RS05385
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 155 322 · GCF_002552055
AssemblyASM255205v1 · Scaffoldhaploid
Genome composition5 992 260 bp · 35,0% GCBacillus toyonensis
Signal transduction countsGenes 125 · HK 69 · RR 56CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key