1 HisKA_3#1
178-245 aa · 68 aa · 18.5% of protein
Raw token
HisKA_3:178:7.06e-20:245:68:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CON55_RS01055
Histidine kinase, Classic
Bacillus toyonensis · GCF_002552055
ClassHKTypeClassicLength367 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002552055#CON55_RS01055Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length367 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage145 / 367 aa (39.5%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa367 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
290-366 aa · 77 aa · 21.0% of protein
Raw token
HATPase_c:290:0.0000000027:366:97:109- Raw architecture: HisKA_3:178:7.06e-20:245:68:68#HATPase_c:290:0.0000000027:366:97:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002552055::NZ_NVNX01000005.1::G00049
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span8030-9776Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCON55_01060RefSeq proteinWP_000397633.1
Context group ID
GCF_002552055::NZ_NVNX01000005.1::G00049Context members
CON55_RS01055CON55_RS01060
Partner locus tags
CON55_RS01055CON55_RS01060
Partner old locus tags
CON55_01060CON55_01065
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_000397633.1Primary protein accession used for annex mappings.
UniProt accessionA0AB36SZL7Primary UniProt accession resolved in the annex database.
UniProt IDA0AB36SZL7_9BACIDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCON55_RS01055Primary locus identifier stored in the genes table.
Old locus tagCON55_01060Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NVNX01000005.1Sequence record reported by the local genomic context database.
Genomic interval8 030-9 133 nt1 104 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span8 030-9 776 ntGCF_002552055::NZ_NVNX01000005.1::G00049
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002552055::NZ_NVNX01000005.1::G00049Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NVNX01000005.1All displayed genes belong to this local TCS context.
Neighborhood span8 030-9 776 nt1 747 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
8 030 nt9 776 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CON55_RS01055GCF_002552055#CON55_RS01055
HKClassicCurrent focus
8 030-9 133 nt · Reverse (-)
CON55_RS01060GCF_002552055#CON55_RS01060
RRNarL
9 138-9 776 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002552055#CON55_RS01055The current gene is the representative for this cluster.
PFAM architectureHisKA_31 domain in the representative PFAM annotation.
PFAM architecture for HKOC_2706523
Simplified PFAM architecture for HKOC_2706523
PFAM domain coverage: 67 / 367 aa (18.3%)
1 aa367 aa
HisKA_3
- Simplified architecture: HisKA_3
- Raw architecture: HisKA_3[178-244]
- Domain count: 1
- Matched identifier: HKOC_2706523
- Positioned domains: HisKA_3 178-244
Cluster members and taxonomy
Representative gene: GCF_002552055#CON55_RS01055
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 155 322 · GCF_002552055
AssemblyASM255205v1 · Scaffoldhaploid
Genome composition5 992 260 bp · 35,0% GCBacillus toyonensis
Signal transduction countsGenes 125 · HK 69 · RR 56CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key