1 HAMP#1
168-234 aa · 67 aa · 14.4% of protein
Raw token
HAMP:168:6.62e-16:234:67:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
COM89_RS12325
Histidine kinase, Classic
Bacillus thuringiensis · GCF_002551895
ClassHKTypeClassicLength466 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002551895#COM89_RS12325Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length466 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage242 / 466 aa (51.9%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa466 aa
Domain-by-domain annotation3 items
2 HisKA#2
238-304 aa · 67 aa · 14.4% of protein
Raw token
HisKA:238:7.69e-19:304:67:643 HATPase_c#3
350-457 aa · 108 aa · 23.2% of protein
Raw token
HATPase_c:350:1.15e-32:457:108:109- Raw architecture: HAMP:168:6.62e-16:234:67:69#HisKA:238:7.69e-19:304:67:64#HATPase_c:350:1.15e-32:457:108:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002551895::NZ_NVKX01000013.1::G00015
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span652394-654469Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCOM89_12330RefSeq proteinWP_000494811.1
Context group ID
GCF_002551895::NZ_NVKX01000013.1::G00015Context members
COM89_RS12325COM89_RS12330
Partner locus tags
COM89_RS12325COM89_RS12330
Partner old locus tags
COM89_12330COM89_12335
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_000494811.1Primary protein accession used for annex mappings.
UniProt accessionA0A9X6U117Primary UniProt accession resolved in the annex database.
UniProt IDA0A9X6U117_BACTUDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCOM89_RS12325Primary locus identifier stored in the genes table.
Old locus tagCOM89_12330Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NVKX01000013.1Sequence record reported by the local genomic context database.
Genomic interval652 394-653 794 nt1 401 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span652 394-654 469 ntGCF_002551895::NZ_NVKX01000013.1::G00015
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002551895::NZ_NVKX01000013.1::G00015Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NVKX01000013.1All displayed genes belong to this local TCS context.
Neighborhood span652 394-654 469 nt2 076 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
652 394 nt654 469 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
COM89_RS12325GCF_002551895#COM89_RS12325
HKClassicCurrent focus
652 394-653 794 nt · Reverse (-)
COM89_RS12330GCF_002551895#COM89_RS12330
RROmpR
653 798-654 469 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000291035#ICE_RS02755Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1761956
Simplified PFAM architecture for HKOC_1761956
PFAM domain coverage: 223 / 466 aa (47.9%)
1 aa466 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[186-233] | HisKA[239-303] | HATPase_c[350-459]
- Domain count: 3
- Matched identifier: HKOC_1761956
- Positioned domains: HAMP 186-233 ; HisKA 239-303 ; HATPase_c 350-459
Cluster members and taxonomy
Representative gene: GCF_000291035#ICE_RS02755
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 428 · GCF_002551895
AssemblyASM255189v1 · Scaffoldhaploid
Genome composition5 903 196 bp · 35,0% GCBacillus thuringiensis
Signal transduction countsGenes 122 · HK 66 · RR 56CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key