1 HAMP#1
165-232 aa · 68 aa · 14.8% of protein
Raw token
HAMP:165:8.29e-16:232:68:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
COM89_RS00510
Histidine kinase, Classic
Bacillus thuringiensis · GCF_002551895
ClassHKTypeClassicLength458 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002551895#COM89_RS00510Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length458 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage228 / 458 aa (49.8%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa458 aa
Domain-by-domain annotation3 items
2 HisKA#2
244-303 aa · 60 aa · 13.1% of protein
Raw token
HisKA:244:0.00000000000194:303:61:643 HATPase_c#3
349-448 aa · 100 aa · 21.8% of protein
Raw token
HATPase_c:349:7.28e-19:448:103:109- Raw architecture: HAMP:165:8.29e-16:232:68:69#HisKA:244:0.00000000000194:303:61:64#HATPase_c:349:7.28e-19:448:103:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002551895::NZ_NVKX01000002.1::G00038
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span83700-85716Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCOM89_00510RefSeq proteinWP_001037252.1
Context group ID
GCF_002551895::NZ_NVKX01000002.1::G00038Context members
COM89_RS00505COM89_RS00510
Partner locus tags
COM89_RS00505COM89_RS00510
Partner old locus tags
COM89_00505COM89_00510
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_001037252.1Primary protein accession used for annex mappings.
UniProt accessionA0A9X6IVS3Primary UniProt accession resolved in the annex database.
UniProt IDA0A9X6IVS3_BACUDDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCOM89_RS00510Primary locus identifier stored in the genes table.
Old locus tagCOM89_00510Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NVKX01000002.1Sequence record reported by the local genomic context database.
Genomic interval84 340-85 716 nt1 377 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span83 700-85 716 ntGCF_002551895::NZ_NVKX01000002.1::G00038
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002551895::NZ_NVKX01000002.1::G00038Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NVKX01000002.1All displayed genes belong to this local TCS context.
Neighborhood span83 700-85 716 nt2 017 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
83 700 nt85 716 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
COM89_RS00505GCF_002551895#COM89_RS00505
RROmpR
83 700-84 347 nt · Forward (+)
COM89_RS00510GCF_002551895#COM89_RS00510
HKClassicCurrent focus
84 340-85 716 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000092165#BMB171_RS14075Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1858358
Simplified PFAM architecture for HKOC_1858358
PFAM domain coverage: 207 / 458 aa (45.2%)
1 aa458 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[182-232] | HisKA[245-303] | HATPase_c[350-446]
- Domain count: 3
- Matched identifier: HKOC_1858358
- Positioned domains: HAMP 182-232 ; HisKA 245-303 ; HATPase_c 350-446
Cluster members and taxonomy
Representative gene: GCF_000092165#BMB171_RS14075
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 428 · GCF_002551895
AssemblyASM255189v1 · Scaffoldhaploid
Genome composition5 903 196 bp · 35,0% GCBacillus thuringiensis
Signal transduction countsGenes 122 · HK 66 · RR 56CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key