1 HAMP#1
157-226 aa · 70 aa · 14.5% of protein
Raw token
HAMP:157:0.00000000000000146:226:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
COM89_RS01215
Histidine kinase, Classic
Bacillus thuringiensis · GCF_002551895
ClassHKTypeClassicLength483 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002551895#COM89_RS01215Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length483 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage243 / 483 aa (50.3%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa483 aa
Domain-by-domain annotation3 items
2 HisKA#2
251-316 aa · 66 aa · 13.7% of protein
Raw token
HisKA:251:0.00000000000111:316:66:643 HATPase_c#3
367-473 aa · 107 aa · 22.2% of protein
Raw token
HATPase_c:367:2.31e-17:473:108:109- Raw architecture: HAMP:157:0.00000000000000146:226:70:69#HisKA:251:0.00000000000111:316:66:64#HATPase_c:367:2.31e-17:473:108:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002551895::NZ_NVKX01000002.1::G00039
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span218409-220539Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCOM89_01215RefSeq proteinWP_080126416.1
Context group ID
GCF_002551895::NZ_NVKX01000002.1::G00039Context members
COM89_RS01215COM89_RS01220
Partner locus tags
COM89_RS01215COM89_RS01220
Partner old locus tags
COM89_01215COM89_01220
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_080126416.1Primary protein accession used for annex mappings.
UniProt accessionA0AAN5XPX1Primary UniProt accession resolved in the annex database.
UniProt IDA0AAN5XPX1_BACCEDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCOM89_RS01215Primary locus identifier stored in the genes table.
Old locus tagCOM89_01215Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NVKX01000002.1Sequence record reported by the local genomic context database.
Genomic interval218 409-219 860 nt1 452 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span218 409-220 539 ntGCF_002551895::NZ_NVKX01000002.1::G00039
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002551895::NZ_NVKX01000002.1::G00039Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NVKX01000002.1All displayed genes belong to this local TCS context.
Neighborhood span218 409-220 539 nt2 131 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
218 409 nt220 539 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
COM89_RS01215GCF_002551895#COM89_RS01215
HKClassicCurrent focus
218 409-219 860 nt · Reverse (-)
COM89_RS01220GCF_002551895#COM89_RS01220
RROmpR
219 874-220 539 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000412975#ICA_RS10580Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1594396
Simplified PFAM architecture for HKOC_1594396
PFAM domain coverage: 226 / 483 aa (46.8%)
1 aa483 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[174-226] | HisKA[252-316] | HATPase_c[366-473]
- Domain count: 3
- Matched identifier: HKOC_1594396
- Positioned domains: HAMP 174-226 ; HisKA 252-316 ; HATPase_c 366-473
Cluster members and taxonomy
Representative gene: GCF_000412975#ICA_RS10580
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 428 · GCF_002551895
AssemblyASM255189v1 · Scaffoldhaploid
Genome composition5 903 196 bp · 35,0% GCBacillus thuringiensis
Signal transduction countsGenes 122 · HK 66 · RR 56CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key