1 Response_reg#1
4-116 aa · 113 aa · 53.8% of protein
Raw token
Response_reg:4:3.37e-24:116:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
COM89_RS11610
Response regulator NarL family
Bacillus thuringiensis · GCF_002551895
ClassRRTypeNarLLength210 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002551895#COM89_RS11610Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length210 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage171 / 210 aa (81.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa210 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
146-203 aa · 58 aa · 27.6% of protein
Raw token
HTH_LUXR:146:4.59e-27:203:58:58- Raw architecture: Response_reg:4:3.37e-24:116:113:111#HTH_LUXR:146:4.59e-27:203:58:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002551895::NZ_NVKX01000013.1::G00012
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span532781-534465Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCOM89_11615RefSeq proteinWP_098943009.1
Context group ID
GCF_002551895::NZ_NVKX01000013.1::G00012Context members
COM89_RS11610COM89_RS11615
Partner locus tags
COM89_RS11610COM89_RS11615
Partner old locus tags
COM89_11615COM89_11620
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_098943009.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCOM89_RS11610Primary locus identifier stored in the genes table.
Old locus tagCOM89_11615Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NVKX01000013.1Sequence record reported by the local genomic context database.
Genomic interval532 781-533 413 nt633 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span532 781-534 465 ntGCF_002551895::NZ_NVKX01000013.1::G00012
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002551895::NZ_NVKX01000013.1::G00012Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NVKX01000013.1All displayed genes belong to this local TCS context.
Neighborhood span532 781-534 465 nt1 685 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
532 781 nt534 465 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
COM89_RS11610GCF_002551895#COM89_RS11610
RRNarLCurrent focus
532 781-533 413 nt · Reverse (-)
COM89_RS11615GCF_002551895#COM89_RS11615
HKClassic
533 410-534 465 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002551895#COM89_RS11610The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_2023528
Simplified PFAM architecture for RROC_2023528
PFAM domain coverage: 169 / 210 aa (80.5%)
1 aa210 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[4-116] | GerE[148-203]
- Domain count: 2
- Matched identifier: RROC_2023528
- Positioned domains: Response_reg 4-116 ; Response_reg 4-116 ; GerE 148-203 ; GerE 148-203
Cluster members and taxonomy
Representative gene: GCF_002551895#COM89_RS11610
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 428 · GCF_002551895
AssemblyASM255189v1 · Scaffoldhaploid
Genome composition5 903 196 bp · 35,0% GCBacillus thuringiensis
Signal transduction countsGenes 122 · HK 66 · RR 56CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key