1 Response_reg#1
6-115 aa · 110 aa · 47.4% of protein
Raw token
Response_reg:6:5.04e-40:115:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
COM89_RS07490
Response regulator OmpR family
Bacillus thuringiensis · GCF_002551895
ClassRRTypeOmpRLength232 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002551895#COM89_RS07490Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length232 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage188 / 232 aa (81.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa232 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
153-230 aa · 78 aa · 33.6% of protein
Raw token
Trans_reg_C:153:1.01e-31:230:78:77- Raw architecture: Response_reg:6:5.04e-40:115:111:111#Trans_reg_C:153:1.01e-31:230:78:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002551895::NZ_NVKX01000010.1::G00001
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span36421-38197Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCOM89_07495RefSeq proteinWP_098942918.1
Context group ID
GCF_002551895::NZ_NVKX01000010.1::G00001Context members
COM89_RS07485COM89_RS07490
Partner locus tags
COM89_RS07485COM89_RS07490
Partner old locus tags
COM89_07490COM89_07495
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_098942918.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCOM89_RS07490Primary locus identifier stored in the genes table.
Old locus tagCOM89_07495Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NVKX01000010.1Sequence record reported by the local genomic context database.
Genomic interval37 499-38 197 nt699 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span36 421-38 197 ntGCF_002551895::NZ_NVKX01000010.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002551895::NZ_NVKX01000010.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NVKX01000010.1All displayed genes belong to this local TCS context.
Neighborhood span36 421-38 197 nt1 777 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
36 421 nt38 197 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
COM89_RS07485GCF_002551895#COM89_RS07485
HKClassic
36 421-37 506 nt · Reverse (-)
COM89_RS07490GCF_002551895#COM89_RS07490
RROmpRCurrent focus
37 499-38 197 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002551895#COM89_RS07490The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1127370
Simplified PFAM architecture for RROC_1127370
PFAM domain coverage: 188 / 232 aa (81.0%)
1 aa232 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[6-115] | Trans_reg_C[153-230]
- Domain count: 2
- Matched identifier: RROC_1127370
- Positioned domains: Response_reg 6-115 ; Response_reg 6-115 ; Trans_reg_C 153-230 ; Trans_reg_C 153-230
Cluster members and taxonomy
Representative gene: GCF_002551895#COM89_RS07490
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 428 · GCF_002551895
AssemblyASM255189v1 · Scaffoldhaploid
Genome composition5 903 196 bp · 35,0% GCBacillus thuringiensis
Signal transduction countsGenes 122 · HK 66 · RR 56CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key