1 HAMP#1
157-226 aa · 70 aa · 14.5% of protein
Raw token
HAMP:157:0.00000000000000146:226:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ICA_RS10580
Histidine kinase, Classic
Bacillus cereus BAG1O-3 · GCF_000412975
ClassHKTypeClassicLength483 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000412975#ICA_RS10580Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length483 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage243 / 483 aa (50.3%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa483 aa
Domain-by-domain annotation3 items
2 HisKA#2
251-316 aa · 66 aa · 13.7% of protein
Raw token
HisKA:251:0.00000000000111:316:66:643 HATPase_c#3
367-473 aa · 107 aa · 22.2% of protein
Raw token
HATPase_c:367:2.31e-17:473:108:109- Raw architecture: HAMP:157:0.00000000000000146:226:70:69#HisKA:251:0.00000000000111:316:66:64#HATPase_c:367:2.31e-17:473:108:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000412975::NZ_KE332536.1::G00019
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span2089984-2092114Genomic interval covered by the local TCS group.
Identifiers
Old locus tagICA_02130RefSeq proteinWP_080126416.1
Context group ID
GCF_000412975::NZ_KE332536.1::G00019Context members
ICA_RS10580ICA_RS10585
Partner locus tags
ICA_RS10580ICA_RS10585
Partner old locus tags
ICA_02130ICA_02131
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_080126416.1Primary protein accession used for annex mappings.
UniProt accessionA0AAN5XPX1Primary UniProt accession resolved in the annex database.
UniProt IDA0AAN5XPX1_BACCEDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagICA_RS10580Primary locus identifier stored in the genes table.
Old locus tagICA_02130Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_KE332536.1Sequence record reported by the local genomic context database.
Genomic interval2 089 984-2 091 435 nt1 452 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span2 089 984-2 092 114 ntGCF_000412975::NZ_KE332536.1::G00019
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000412975::NZ_KE332536.1::G00019Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_KE332536.1All displayed genes belong to this local TCS context.
Neighborhood span2 089 984-2 092 114 nt2 131 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 089 984 nt2 092 114 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ICA_RS10580GCF_000412975#ICA_RS10580
HKClassicCurrent focus
2 089 984-2 091 435 nt · Reverse (-)
ICA_RS10585GCF_000412975#ICA_RS10585
RROmpR
2 091 449-2 092 114 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000412975#ICA_RS10580The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1594396
Simplified PFAM architecture for HKOC_1594396
PFAM domain coverage: 226 / 483 aa (46.8%)
1 aa483 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[174-226] | HisKA[252-316] | HATPase_c[366-473]
- Domain count: 3
- Matched identifier: HKOC_1594396
- Positioned domains: HAMP 174-226 ; HisKA 252-316 ; HATPase_c 366-473
Cluster members and taxonomy
Representative gene: GCF_000412975#ICA_RS10580
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 053 169 · GCF_000412975
AssemblyBaci_cere_BAG1O-3_G13160_V1 · Scaffoldhaploid
Genome composition5 851 194 bp · 35,0% GCBacillus cereus BAG1O-3
Signal transduction countsGenes 115 · HK 62 · RR 53CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key