1 Response_reg#1
6-115 aa · 110 aa · 46.6% of protein
Raw token
Response_reg:6:7.4e-37:115:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CHR61_RS13160
Response regulator OmpR family
Faecalibacterium prausnitzii · GCF_002550045
ClassRRTypeOmpRLength236 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002550045#CHR61_RS13160Stable P2CS identifier used across views.
GenomeGCF_002550045Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Faecalibacterium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length236 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage186 / 236 aa (78.8%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa236 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
153-228 aa · 76 aa · 32.2% of protein
Raw token
Trans_reg_C:153:4.54e-26:228:76:77- Raw architecture: Response_reg:6:7.4e-37:115:111:111#Trans_reg_C:153:4.54e-26:228:76:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002550045::NZ_NOUW01000037.1::G00022
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span349-2935Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCHR61_13135RefSeq proteinWP_097771717.1
Context group ID
GCF_002550045::NZ_NOUW01000037.1::G00022Context members
CHR61_RS13160CHR61_RS13165
Partner locus tags
CHR61_RS13160CHR61_RS13165
Partner old locus tags
CHR61_13135CHR61_13140
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_097771717.1Primary protein accession used for annex mappings.
UniProt accessionA0A2A7BAR4Primary UniProt accession resolved in the annex database.
UniProt IDA0A2A7BAR4_9FIRMDisplay identifier provided by UniProt.
GO / PubMed6 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCHR61_RS13160Primary locus identifier stored in the genes table.
Old locus tagCHR61_13135Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NOUW01000037.1Sequence record reported by the local genomic context database.
Genomic interval349-1 059 nt711 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span349-2 935 ntGCF_002550045::NZ_NOUW01000037.1::G00022
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002550045::NZ_NOUW01000037.1::G00022Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NOUW01000037.1All displayed genes belong to this local TCS context.
Neighborhood span349-2 935 nt2 587 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
349 nt2 935 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CHR61_RS13160GCF_002550045#CHR61_RS13160
RROmpRCurrent focus
349-1 059 nt · Reverse (-)
CHR61_RS13165GCF_002550045#CHR61_RS13165
HKClassic
1 052-2 935 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002550045#CHR61_RS13160The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0994056
Simplified PFAM architecture for RROC_0994056
PFAM domain coverage: 185 / 236 aa (78.4%)
1 aa236 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[6-114] | Trans_reg_C[153-228]
- Domain count: 2
- Matched identifier: RROC_0994056
- Positioned domains: Response_reg 6-114 ; Response_reg 6-114 ; Trans_reg_C 153-228 ; Trans_reg_C 153-228
Cluster members and taxonomy
Representative gene: GCF_002550045#CHR61_RS13160
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 853 · GCF_002550045
AssemblyASM255004v1 · Contighaploid
Genome composition2 879 169 bp · 57,0% GCFaecalibacterium prausnitzii
Signal transduction countsGenes 46 · HK 21 · RR 24CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusFaecalibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Faecalibacterium
Related genes
Preview from the same derived genome key