1 KdpD#1
23-232 aa · 210 aa · 23.4% of protein
Raw token
KdpD:23:2.44e-140:232:210:210P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CHR61_RS13110
Histidine kinase, Classic
Faecalibacterium prausnitzii · GCF_002550045
ClassHKTypeClassicLength897 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_002550045#CHR61_RS13110Stable P2CS identifier used across views.
GenomeGCF_002550045Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Faecalibacterium
Domain signature
Compact overview inferred from the domain field
KdpDHisKAHATPase_c
Protein length897 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage387 / 897 aa (43.1%)Merged over positioned domains only.
Domain description1 KdpD,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa897 aa
Domain-by-domain annotation3 items
2 HisKA#2
669-736 aa · 68 aa · 7.6% of protein
Raw token
HisKA:669:0.000000000009:736:68:643 HATPase_c#3
781-889 aa · 109 aa · 12.2% of protein
Raw token
HATPase_c:781:1.04e-32:889:109:109- Raw architecture: KdpD:23:2.44e-140:232:210:210#HisKA:669:0.000000000009:736:68:64#HATPase_c:781:1.04e-32:889:109:109
- Domain description: 1 KdpD,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_002550045::NZ_NOUW01000036.1::G00021
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span15920-18613Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCHR61_13085RefSeq proteinWP_097771711.1
Context group ID
GCF_002550045::NZ_NOUW01000036.1::G00021Context members
CHR61_RS13110
Partner locus tags
CHR61_RS13110
Partner old locus tags
CHR61_13085
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_097771711.1Primary protein accession used for annex mappings.
UniProt accessionA0A2A7BAJ5Primary UniProt accession resolved in the annex database.
UniProt IDA0A2A7BAJ5_9FIRMDisplay identifier provided by UniProt.
GO / PubMed4 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCHR61_RS13110Primary locus identifier stored in the genes table.
Old locus tagCHR61_13085Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NOUW01000036.1Sequence record reported by the local genomic context database.
Genomic interval15 920-18 613 nt2 694 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span15 920-18 613 ntGCF_002550045::NZ_NOUW01000036.1::G00021
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002550045::NZ_NOUW01000036.1::G00021Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NOUW01000036.1All displayed genes belong to this local TCS context.
Neighborhood span15 920-18 613 nt2 694 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
15 920 nt18 613 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
CHR61_RS13110GCF_002550045#CHR61_RS13110
HKClassicCurrent focus
15 920-18 613 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002550045#CHR61_RS13110The current gene is the representative for this cluster.
PFAM architectureKdpD + DUF4118 + HisKA + HATPase_c4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0410995
Simplified PFAM architecture for HKOC_0410995
PFAM domain coverage: 494 / 897 aa (55.1%)
1 aa897 aa
KdpDDUF4118HisKAHATPase_c
- Simplified architecture: KdpD + DUF4118 + HisKA + HATPase_c
- Raw architecture: KdpD[24-232] | DUF4118[401-507] | HisKA[669-736] | HATPase_c[781-890]
- Domain count: 4
- Matched identifier: HKOC_0410995
- Positioned domains: KdpD 24-232 ; DUF4118 401-507 ; HisKA 669-736 ; HATPase_c 781-890
Cluster members and taxonomy
Representative gene: GCF_002550045#CHR61_RS13110
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 853 · GCF_002550045
AssemblyASM255004v1 · Contighaploid
Genome composition2 879 169 bp · 57,0% GCFaecalibacterium prausnitzii
Signal transduction countsGenes 46 · HK 21 · RR 24CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusFaecalibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Faecalibacterium
Related genes
Preview from the same derived genome key