1 HAMP#1
207-276 aa · 70 aa · 13.9% of protein
Raw token
HAMP:207:1.59e-16:276:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CHR61_RS10795
Histidine kinase, Classic
Faecalibacterium prausnitzii · GCF_002550045
ClassHKTypeClassicLength503 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002550045#CHR61_RS10795Stable P2CS identifier used across views.
GenomeGCF_002550045Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Faecalibacterium
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length503 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage243 / 503 aa (48.3%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa503 aa
Domain-by-domain annotation3 items
2 HisKA#2
280-347 aa · 68 aa · 13.5% of protein
Raw token
HisKA:280:1.22e-16:347:68:643 HATPase_c#3
393-497 aa · 105 aa · 20.9% of protein
Raw token
HATPase_c:393:2.42e-26:497:105:109- Raw architecture: HAMP:207:1.59e-16:276:70:69#HisKA:280:1.22e-16:347:68:64#HATPase_c:393:2.42e-26:497:105:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002550045::NZ_NOUW01000029.1::G00017
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span110510-112726Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCHR61_10775RefSeq proteinWP_097771339.1
Context group ID
GCF_002550045::NZ_NOUW01000029.1::G00017Context members
CHR61_RS10795CHR61_RS10800
Partner locus tags
CHR61_RS10795CHR61_RS10800
Partner old locus tags
CHR61_10775CHR61_10780
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_097771339.1Primary protein accession used for annex mappings.
UniProt accessionA0A2A7BC27Primary UniProt accession resolved in the annex database.
UniProt IDA0A2A7BC27_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCHR61_RS10795Primary locus identifier stored in the genes table.
Old locus tagCHR61_10775Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NOUW01000029.1Sequence record reported by the local genomic context database.
Genomic interval110 510-112 021 nt1 512 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span110 510-112 726 ntGCF_002550045::NZ_NOUW01000029.1::G00017
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002550045::NZ_NOUW01000029.1::G00017Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NOUW01000029.1All displayed genes belong to this local TCS context.
Neighborhood span110 510-112 726 nt2 217 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
110 510 nt112 726 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CHR61_RS10795GCF_002550045#CHR61_RS10795
HKClassicCurrent focus
110 510-112 021 nt · Reverse (-)
CHR61_RS10800GCF_002550045#CHR61_RS10800
RROmpR
112 040-112 726 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002550045#CHR61_RS10795The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1459846
Simplified PFAM architecture for HKOC_1459846
PFAM domain coverage: 219 / 503 aa (43.5%)
1 aa503 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[228-275] | HisKA[281-347] | HATPase_c[394-497]
- Domain count: 3
- Matched identifier: HKOC_1459846
- Positioned domains: HAMP 228-275 ; HisKA 281-347 ; HATPase_c 394-497
Cluster members and taxonomy
Representative gene: GCF_002550045#CHR61_RS10795
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 853 · GCF_002550045
AssemblyASM255004v1 · Contighaploid
Genome composition2 879 169 bp · 57,0% GCFaecalibacterium prausnitzii
Signal transduction countsGenes 46 · HK 21 · RR 24CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusFaecalibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Faecalibacterium
Related genes
Preview from the same derived genome key