1 Response_reg#1
4-115 aa · 112 aa · 47.9% of protein
Raw token
Response_reg:4:5.8e-34:115:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CHR61_RS10400
Response regulator OmpR family
Faecalibacterium prausnitzii · GCF_002550045
ClassRRTypeOmpRLength234 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002550045#CHR61_RS10400Stable P2CS identifier used across views.
GenomeGCF_002550045Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Faecalibacterium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length234 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage189 / 234 aa (80.8%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa234 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
156-232 aa · 77 aa · 32.9% of protein
Raw token
Trans_reg_C:156:1.61e-28:232:77:77- Raw architecture: Response_reg:4:5.8e-34:115:112:111#Trans_reg_C:156:1.61e-28:232:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002550045::NZ_NOUW01000029.1::G00016
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span47986-50193Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCHR61_10380RefSeq proteinWP_005934889.1
Context group ID
GCF_002550045::NZ_NOUW01000029.1::G00016Context members
CHR61_RS10395CHR61_RS10400
Partner locus tags
CHR61_RS10395CHR61_RS10400
Partner old locus tags
CHR61_10375CHR61_10380
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_005934889.1Primary protein accession used for annex mappings.
UniProt accessionC7H918Primary UniProt accession resolved in the annex database.
UniProt IDC7H918_FAED2Display identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCHR61_RS10400Primary locus identifier stored in the genes table.
Old locus tagCHR61_10380Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NOUW01000029.1Sequence record reported by the local genomic context database.
Genomic interval49 489-50 193 nt705 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span47 986-50 193 ntGCF_002550045::NZ_NOUW01000029.1::G00016
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002550045::NZ_NOUW01000029.1::G00016Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NOUW01000029.1All displayed genes belong to this local TCS context.
Neighborhood span47 986-50 193 nt2 208 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
47 986 nt50 193 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CHR61_RS10395GCF_002550045#CHR61_RS10395
HKClassic
47 986-49 407 nt · Reverse (-)
CHR61_RS10400GCF_002550045#CHR61_RS10400
RROmpRCurrent focus
49 489-50 193 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000162015#FAEPRAA2165_RS11725Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1047521
Simplified PFAM architecture for RROC_1047521
PFAM domain coverage: 188 / 234 aa (80.3%)
1 aa234 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-115] | Trans_reg_C[156-231]
- Domain count: 2
- Matched identifier: RROC_1047521
- Positioned domains: Response_reg 4-115 ; Response_reg 4-115 ; Trans_reg_C 156-231 ; Trans_reg_C 156-231
Cluster members and taxonomy
Representative gene: GCF_000162015#FAEPRAA2165_RS11725
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 853 · GCF_002550045
AssemblyASM255004v1 · Contighaploid
Genome composition2 879 169 bp · 57,0% GCFaecalibacterium prausnitzii
Signal transduction countsGenes 46 · HK 21 · RR 24CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusFaecalibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Faecalibacterium
Related genes
Preview from the same derived genome key