1 HAMP#1
176-247 aa · 72 aa · 15.2% of protein
Raw token
HAMP:176:0.00000000000142:247:72:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CHR61_RS10395
Histidine kinase, Classic
Faecalibacterium prausnitzii · GCF_002550045
ClassHKTypeClassicLength473 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002550045#CHR61_RS10395Stable P2CS identifier used across views.
GenomeGCF_002550045Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Faecalibacterium
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length473 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage246 / 473 aa (52.0%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa473 aa
Domain-by-domain annotation3 items
2 HisKA#2
251-318 aa · 68 aa · 14.4% of protein
Raw token
HisKA:251:2.6e-18:318:68:643 HATPase_c#3
364-469 aa · 106 aa · 22.4% of protein
Raw token
HATPase_c:364:2.22e-29:469:107:109- Raw architecture: HAMP:176:0.00000000000142:247:72:69#HisKA:251:2.6e-18:318:68:64#HATPase_c:364:2.22e-29:469:107:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002550045::NZ_NOUW01000029.1::G00016
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span47986-50193Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCHR61_10375RefSeq proteinWP_005934888.1
Context group ID
GCF_002550045::NZ_NOUW01000029.1::G00016Context members
CHR61_RS10395CHR61_RS10400
Partner locus tags
CHR61_RS10395CHR61_RS10400
Partner old locus tags
CHR61_10375CHR61_10380
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_005934888.1Primary protein accession used for annex mappings.
UniProt accessionC7H917Primary UniProt accession resolved in the annex database.
UniProt IDC7H917_FAED2Display identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCHR61_RS10395Primary locus identifier stored in the genes table.
Old locus tagCHR61_10375Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NOUW01000029.1Sequence record reported by the local genomic context database.
Genomic interval47 986-49 407 nt1 422 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span47 986-50 193 ntGCF_002550045::NZ_NOUW01000029.1::G00016
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002550045::NZ_NOUW01000029.1::G00016Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NOUW01000029.1All displayed genes belong to this local TCS context.
Neighborhood span47 986-50 193 nt2 208 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
47 986 nt50 193 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CHR61_RS10395GCF_002550045#CHR61_RS10395
HKClassicCurrent focus
47 986-49 407 nt · Reverse (-)
CHR61_RS10400GCF_002550045#CHR61_RS10400
RROmpR
49 489-50 193 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000162015#FAEPRAA2165_RS11720Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1686928
Simplified PFAM architecture for HKOC_1686928
PFAM domain coverage: 228 / 473 aa (48.2%)
1 aa473 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[194-247] | HisKA[251-318] | HATPase_c[365-470]
- Domain count: 3
- Matched identifier: HKOC_1686928
- Positioned domains: HAMP 194-247 ; HisKA 251-318 ; HATPase_c 365-470
Cluster members and taxonomy
Representative gene: GCF_000162015#FAEPRAA2165_RS11720
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 853 · GCF_002550045
AssemblyASM255004v1 · Contighaploid
Genome composition2 879 169 bp · 57,0% GCFaecalibacterium prausnitzii
Signal transduction countsGenes 46 · HK 21 · RR 24CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusFaecalibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Faecalibacterium
Related genes
Preview from the same derived genome key