1 Response_reg#1
4-112 aa · 109 aa · 46.8% of protein
Raw token
Response_reg:4:1.17e-31:112:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CHR61_RS08695
Response regulator OmpR family
Faecalibacterium prausnitzii · GCF_002550045
ClassRRTypeOmpRLength233 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_002550045#CHR61_RS08695Stable P2CS identifier used across views.
GenomeGCF_002550045Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Faecalibacterium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length233 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage186 / 233 aa (79.8%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa233 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
149-225 aa · 77 aa · 33.0% of protein
Raw token
Trans_reg_C:149:2.71e-28:225:77:77- Raw architecture: Response_reg:4:1.17e-31:112:111:111#Trans_reg_C:149:2.71e-28:225:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_002550045::NZ_NOUW01000027.1::G00011
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span4448-5149Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCHR61_08670RefSeq proteinWP_097771040.1
Context group ID
GCF_002550045::NZ_NOUW01000027.1::G00011Context members
CHR61_RS08695
Partner locus tags
CHR61_RS08695
Partner old locus tags
CHR61_08670
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_097771040.1Primary protein accession used for annex mappings.
UniProt accessionA0A2A7BC78Primary UniProt accession resolved in the annex database.
UniProt IDA0A2A7BC78_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCHR61_RS08695Primary locus identifier stored in the genes table.
Old locus tagCHR61_08670Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NOUW01000027.1Sequence record reported by the local genomic context database.
Genomic interval4 448-5 149 nt702 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span4 448-5 149 ntGCF_002550045::NZ_NOUW01000027.1::G00011
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002550045::NZ_NOUW01000027.1::G00011Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NOUW01000027.1All displayed genes belong to this local TCS context.
Neighborhood span4 448-5 149 nt702 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
4 448 nt5 149 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
CHR61_RS08695GCF_002550045#CHR61_RS08695
RROmpRCurrent focus
4 448-5 149 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002550045#CHR61_RS08695The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1088380
Simplified PFAM architecture for RROC_1088380
PFAM domain coverage: 186 / 233 aa (79.8%)
1 aa233 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-112] | Trans_reg_C[149-225]
- Domain count: 2
- Matched identifier: RROC_1088380
- Positioned domains: Response_reg 4-112 ; Response_reg 4-112 ; Trans_reg_C 149-225 ; Trans_reg_C 149-225
Cluster members and taxonomy
Representative gene: GCF_002550045#CHR61_RS08695
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 853 · GCF_002550045
AssemblyASM255004v1 · Contighaploid
Genome composition2 879 169 bp · 57,0% GCFaecalibacterium prausnitzii
Signal transduction countsGenes 46 · HK 21 · RR 24CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusFaecalibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Faecalibacterium
Related genes
Preview from the same derived genome key