1 Response_reg#1
4-113 aa · 110 aa · 48.9% of protein
Raw token
Response_reg:4:1.15e-37:113:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CHR61_RS05915
Response regulator OmpR family
Faecalibacterium prausnitzii · GCF_002550045
ClassRRTypeOmpRLength225 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002550045#CHR61_RS05915Stable P2CS identifier used across views.
GenomeGCF_002550045Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Faecalibacterium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length225 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage186 / 225 aa (82.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa225 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
145-220 aa · 76 aa · 33.8% of protein
Raw token
Trans_reg_C:145:3.37e-23:220:78:77- Raw architecture: Response_reg:4:1.15e-37:113:110:111#Trans_reg_C:145:3.37e-23:220:78:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002550045::NZ_NOUW01000017.1::G00006
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span105822-107665Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCHR61_05890RefSeq proteinWP_097770659.1
Context group ID
GCF_002550045::NZ_NOUW01000017.1::G00006Context members
CHR61_RS05915CHR61_RS05920
Partner locus tags
CHR61_RS05915CHR61_RS05920
Partner old locus tags
CHR61_05890CHR61_05895
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_097770659.1Primary protein accession used for annex mappings.
UniProt accessionA0ABS8FEE2Primary UniProt accession resolved in the annex database.
UniProt IDA0ABS8FEE2_9FIRMDisplay identifier provided by UniProt.
GO / PubMed0 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCHR61_RS05915Primary locus identifier stored in the genes table.
Old locus tagCHR61_05890Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NOUW01000017.1Sequence record reported by the local genomic context database.
Genomic interval105 822-106 499 nt678 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span105 822-107 665 ntGCF_002550045::NZ_NOUW01000017.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002550045::NZ_NOUW01000017.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NOUW01000017.1All displayed genes belong to this local TCS context.
Neighborhood span105 822-107 665 nt1 844 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
105 822 nt107 665 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CHR61_RS05915GCF_002550045#CHR61_RS05915
RROmpRCurrent focus
105 822-106 499 nt · Forward (+)
CHR61_RS05920GCF_002550045#CHR61_RS05920
HKClassic
106 496-107 665 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002550045#CHR61_RS05915The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1476337
Simplified PFAM architecture for RROC_1476337
PFAM domain coverage: 185 / 225 aa (82.2%)
1 aa225 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-113] | Trans_reg_C[145-219]
- Domain count: 2
- Matched identifier: RROC_1476337
- Positioned domains: Response_reg 4-113 ; Response_reg 4-113 ; Trans_reg_C 145-219 ; Trans_reg_C 145-219
Cluster members and taxonomy
Representative gene: GCF_002550045#CHR61_RS05915
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 853 · GCF_002550045
AssemblyASM255004v1 · Contighaploid
Genome composition2 879 169 bp · 57,0% GCFaecalibacterium prausnitzii
Signal transduction countsGenes 46 · HK 21 · RR 24CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusFaecalibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Faecalibacterium
Related genes
Preview from the same derived genome key