1 HAMP#1
271-342 aa · 72 aa · 12.6% of protein
Raw token
HAMP:271:0.0000000000617:342:72:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CHR61_RS04930
Histidine kinase, Classic
Faecalibacterium prausnitzii · GCF_002550045
ClassHKTypeClassicLength573 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002550045#CHR61_RS04930Stable P2CS identifier used across views.
GenomeGCF_002550045Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Faecalibacterium
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length573 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage247 / 573 aa (43.1%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa573 aa
Domain-by-domain annotation3 items
2 His_kinase#2
358-427 aa · 70 aa · 12.2% of protein
Raw token
His_kinase:358:1.7e-20:427:70:803 HATPase_c#3
459-563 aa · 105 aa · 18.3% of protein
Raw token
HATPase_c:459:0.00000000187:563:109:109- Raw architecture: HAMP:271:0.0000000000617:342:72:69#His_kinase:358:1.7e-20:427:70:80#HATPase_c:459:0.00000000187:563:109:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002550045::NZ_NOUW01000015.1::G00003
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span31506-34795Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCHR61_04910RefSeq proteinWP_242961367.1
Context group ID
GCF_002550045::NZ_NOUW01000015.1::G00003Context members
CHR61_RS04925CHR61_RS04930
Partner locus tags
CHR61_RS04925CHR61_RS04930
Partner old locus tags
CHR61_04905CHR61_04910
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_242961367.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCHR61_RS04930Primary locus identifier stored in the genes table.
Old locus tagCHR61_04910Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NOUW01000015.1Sequence record reported by the local genomic context database.
Genomic interval33 074-34 795 nt1 722 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span31 506-34 795 ntGCF_002550045::NZ_NOUW01000015.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002550045::NZ_NOUW01000015.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NOUW01000015.1All displayed genes belong to this local TCS context.
Neighborhood span31 506-34 795 nt3 290 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
31 506 nt34 795 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CHR61_RS04925GCF_002550045#CHR61_RS04925
RRunclassified
31 506-33 077 nt · Reverse (-)
CHR61_RS04930GCF_002550045#CHR61_RS04930
HKClassicCurrent focus
33 074-34 795 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002550045#CHR61_RS04930The current gene is the representative for this cluster.
PFAM architectureHAMP + His_kinase + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1198732
Simplified PFAM architecture for HKOC_1198732
PFAM domain coverage: 226 / 573 aa (39.4%)
1 aa573 aa
HAMPHis_kinaseHATPase_c
- Simplified architecture: HAMP + His_kinase + HATPase_c
- Raw architecture: HAMP[294-341] | His_kinase[358-430] | HATPase_c[458-562]
- Domain count: 3
- Matched identifier: HKOC_1198732
- Positioned domains: HAMP 294-341 ; His_kinase 358-430 ; HATPase_c 458-562
Cluster members and taxonomy
Representative gene: GCF_002550045#CHR61_RS04930
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 853 · GCF_002550045
AssemblyASM255004v1 · Contighaploid
Genome composition2 879 169 bp · 57,0% GCFaecalibacterium prausnitzii
Signal transduction countsGenes 46 · HK 21 · RR 24CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusFaecalibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Faecalibacterium
Related genes
Preview from the same derived genome key