1 Response_reg#1
4-115 aa · 112 aa · 21.4% of protein
Raw token
Response_reg:4:5.49e-22:115:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CHR61_RS04925
Response regulator, unclassified
Faecalibacterium prausnitzii · GCF_002550045
ClassRRTypeunclassifiedLength523 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002550045#CHR61_RS04925Stable P2CS identifier used across views.
GenomeGCF_002550045Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Faecalibacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length523 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage153 / 523 aa (29.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa523 aa
Domain-by-domain annotation2 items
2 HTH_AraC#2
429-469 aa · 41 aa · 7.8% of protein
Raw token
HTH_AraC:429:0.000000298:469:41:42- Raw architecture: Response_reg:4:5.49e-22:115:113:111#HTH_AraC:429:0.000000298:469:41:42
- Domain description: 1 Response_reg,1 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002550045::NZ_NOUW01000015.1::G00003
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span31506-34795Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCHR61_04905RefSeq proteinWP_097770500.1
Context group ID
GCF_002550045::NZ_NOUW01000015.1::G00003Context members
CHR61_RS04925CHR61_RS04930
Partner locus tags
CHR61_RS04925CHR61_RS04930
Partner old locus tags
CHR61_04905CHR61_04910
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_097770500.1Primary protein accession used for annex mappings.
UniProt accessionA0A2A7BF43Primary UniProt accession resolved in the annex database.
UniProt IDA0A2A7BF43_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCHR61_RS04925Primary locus identifier stored in the genes table.
Old locus tagCHR61_04905Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NOUW01000015.1Sequence record reported by the local genomic context database.
Genomic interval31 506-33 077 nt1 572 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span31 506-34 795 ntGCF_002550045::NZ_NOUW01000015.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002550045::NZ_NOUW01000015.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NOUW01000015.1All displayed genes belong to this local TCS context.
Neighborhood span31 506-34 795 nt3 290 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
31 506 nt34 795 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CHR61_RS04925GCF_002550045#CHR61_RS04925
RRunclassifiedCurrent focus
31 506-33 077 nt · Reverse (-)
CHR61_RS04930GCF_002550045#CHR61_RS04930
HKClassic
33 074-34 795 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002550045#CHR61_RS04925The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0121845
Simplified PFAM architecture for RROC_0121845
PFAM domain coverage: 190 / 523 aa (36.3%)
1 aa523 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[4-115] | HTH_18[442-519]
- Domain count: 2
- Matched identifier: RROC_0121845
- Positioned domains: Response_reg 4-115 ; Response_reg 4-115 ; HTH_18 442-519 ; HTH_18 442-519
Cluster members and taxonomy
Representative gene: GCF_002550045#CHR61_RS04925
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 853 · GCF_002550045
AssemblyASM255004v1 · Contighaploid
Genome composition2 879 169 bp · 57,0% GCFaecalibacterium prausnitzii
Signal transduction countsGenes 46 · HK 21 · RR 24CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusFaecalibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Faecalibacterium
Related genes
Preview from the same derived genome key