1 Response_reg#1
17-77 aa · 61 aa · 24.4% of protein
Raw token
Response_reg:17:0.000000358:77:62:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CHR61_RS03550
Response regulator, unclassified
Faecalibacterium prausnitzii · GCF_002550045
ClassRRTypeunclassifiedLength250 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_002550045#CHR61_RS03550Stable P2CS identifier used across views.
GenomeGCF_002550045Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Faecalibacterium
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length250 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage61 / 250 aa (24.4%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa250 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:17:0.000000358:77:62:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_002550045::NZ_NOUW01000014.1::G00001
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span39178-39930Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCHR61_03530RefSeq proteinWP_097770274.1
Context group ID
GCF_002550045::NZ_NOUW01000014.1::G00001Context members
CHR61_RS03550
Partner locus tags
CHR61_RS03550
Partner old locus tags
CHR61_03530
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_097770274.1Primary protein accession used for annex mappings.
UniProt accessionA0A1Q6QN12Primary UniProt accession resolved in the annex database.
UniProt IDA0A1Q6QN12_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCHR61_RS03550Primary locus identifier stored in the genes table.
Old locus tagCHR61_03530Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NOUW01000014.1Sequence record reported by the local genomic context database.
Genomic interval39 178-39 930 nt753 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span39 178-39 930 ntGCF_002550045::NZ_NOUW01000014.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002550045::NZ_NOUW01000014.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NOUW01000014.1All displayed genes belong to this local TCS context.
Neighborhood span39 178-39 930 nt753 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
39 178 nt39 930 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
CHR61_RS03550GCF_002550045#CHR61_RS03550
RRunclassifiedCurrent focus
39 178-39 930 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002550045#CHR61_RS03550The current gene is the representative for this cluster.
PFAM architectureNo PFAM architecture availablePFAM architecture is attached when the local PFAM databases provide a match.
PFAM architecture for RROC_0723668
No PFAM cluster architecture is available for the current selection on this server.
Cluster members and taxonomy
Representative gene: GCF_002550045#CHR61_RS03550
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 853 · GCF_002550045
AssemblyASM255004v1 · Contighaploid
Genome composition2 879 169 bp · 57,0% GCFaecalibacterium prausnitzii
Signal transduction countsGenes 46 · HK 21 · RR 24CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusFaecalibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Faecalibacterium
Related genes
Preview from the same derived genome key