1 Response_reg#1
8-114 aa · 107 aa · 47.6% of protein
Raw token
Response_reg:8:2.78e-35:114:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CHR61_RS02430
Response regulator OmpR family
Faecalibacterium prausnitzii · GCF_002550045
ClassRRTypeOmpRLength225 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002550045#CHR61_RS02430Stable P2CS identifier used across views.
GenomeGCF_002550045Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Faecalibacterium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length225 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage183 / 225 aa (81.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa225 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
148-223 aa · 76 aa · 33.8% of protein
Raw token
Trans_reg_C:148:2.73e-25:223:77:77- Raw architecture: Response_reg:8:2.78e-35:114:110:111#Trans_reg_C:148:2.73e-25:223:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002550045::NZ_NOUW01000007.1::G00024
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span116304-118291Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCHR61_02410RefSeq proteinWP_430517078.1
Context group ID
GCF_002550045::NZ_NOUW01000007.1::G00024Context members
CHR61_RS02425CHR61_RS02430
Partner locus tags
CHR61_RS02425CHR61_RS02430
Partner old locus tags
CHR61_02405CHR61_02410
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_430517078.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCHR61_RS02430Primary locus identifier stored in the genes table.
Old locus tagCHR61_02410Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NOUW01000007.1Sequence record reported by the local genomic context database.
Genomic interval117 392-118 291 nt900 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span116 304-118 291 ntGCF_002550045::NZ_NOUW01000007.1::G00024
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002550045::NZ_NOUW01000007.1::G00024Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NOUW01000007.1All displayed genes belong to this local TCS context.
Neighborhood span116 304-118 291 nt1 988 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
116 304 nt118 291 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CHR61_RS02425GCF_002550045#CHR61_RS02425
HKClassic
116 304-117 386 nt · Reverse (-)
CHR61_RS02430GCF_002550045#CHR61_RS02430
RROmpRCurrent focus
117 392-118 291 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002550045#CHR61_RS02430The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1476338
Simplified PFAM architecture for RROC_1476338
PFAM domain coverage: 180 / 225 aa (80.0%)
1 aa225 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[8-113] | Trans_reg_C[149-222]
- Domain count: 2
- Matched identifier: RROC_1476338
- Positioned domains: Response_reg 8-113 ; Response_reg 8-113 ; Trans_reg_C 149-222 ; Trans_reg_C 149-222
Cluster members and taxonomy
Representative gene: GCF_002550045#CHR61_RS02430
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 853 · GCF_002550045
AssemblyASM255004v1 · Contighaploid
Genome composition2 879 169 bp · 57,0% GCFaecalibacterium prausnitzii
Signal transduction countsGenes 46 · HK 21 · RR 24CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusFaecalibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Faecalibacterium
Related genes
Preview from the same derived genome key