1 HAMP#1
75-139 aa · 65 aa · 18.1% of protein
Raw token
HAMP:75:0.000000497:139:66:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CHR61_RS02425
Histidine kinase, Classic
Faecalibacterium prausnitzii · GCF_002550045
ClassHKTypeClassicLength360 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002550045#CHR61_RS02425Stable P2CS identifier used across views.
GenomeGCF_002550045Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Faecalibacterium
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length360 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage224 / 360 aa (62.2%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa360 aa
Domain-by-domain annotation3 items
2 HisKA#2
152-213 aa · 62 aa · 17.2% of protein
Raw token
HisKA:152:0.0000000158:213:63:643 HATPase_c#3
263-359 aa · 97 aa · 26.9% of protein
Raw token
HATPase_c:263:2.56e-17:359:99:109- Raw architecture: HAMP:75:0.000000497:139:66:69#HisKA:152:0.0000000158:213:63:64#HATPase_c:263:2.56e-17:359:99:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002550045::NZ_NOUW01000007.1::G00024
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span116304-118291Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCHR61_02405RefSeq proteinWP_097770115.1
Context group ID
GCF_002550045::NZ_NOUW01000007.1::G00024Context members
CHR61_RS02425CHR61_RS02430
Partner locus tags
CHR61_RS02425CHR61_RS02430
Partner old locus tags
CHR61_02405CHR61_02410
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_097770115.1Primary protein accession used for annex mappings.
UniProt accessionA0A2A7BGI9Primary UniProt accession resolved in the annex database.
UniProt IDA0A2A7BGI9_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCHR61_RS02425Primary locus identifier stored in the genes table.
Old locus tagCHR61_02405Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NOUW01000007.1Sequence record reported by the local genomic context database.
Genomic interval116 304-117 386 nt1 083 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span116 304-118 291 ntGCF_002550045::NZ_NOUW01000007.1::G00024
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002550045::NZ_NOUW01000007.1::G00024Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NOUW01000007.1All displayed genes belong to this local TCS context.
Neighborhood span116 304-118 291 nt1 988 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
116 304 nt118 291 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CHR61_RS02425GCF_002550045#CHR61_RS02425
HKClassicCurrent focus
116 304-117 386 nt · Reverse (-)
CHR61_RS02430GCF_002550045#CHR61_RS02430
RROmpR
117 392-118 291 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002550045#CHR61_RS02425The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2748161
Simplified PFAM architecture for HKOC_2748161
PFAM domain coverage: 203 / 360 aa (56.4%)
1 aa360 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[95-140] | HisKA[153-213] | HATPase_c[262-357]
- Domain count: 3
- Matched identifier: HKOC_2748161
- Positioned domains: HAMP 95-140 ; HisKA 153-213 ; HATPase_c 262-357
Cluster members and taxonomy
Representative gene: GCF_002550045#CHR61_RS02425
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 853 · GCF_002550045
AssemblyASM255004v1 · Contighaploid
Genome composition2 879 169 bp · 57,0% GCFaecalibacterium prausnitzii
Signal transduction countsGenes 46 · HK 21 · RR 24CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusFaecalibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Faecalibacterium
Related genes
Preview from the same derived genome key