1 Response_reg#1
2-114 aa · 113 aa · 49.6% of protein
Raw token
Response_reg:2:3.07e-31:114:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CGS59_RS13695
Response regulator OmpR family
Faecalibacterium prausnitzii · GCF_002550015
ClassRRTypeOmpRLength228 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002550015#CGS59_RS13695Stable P2CS identifier used across views.
GenomeGCF_002550015Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Faecalibacterium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length228 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage186 / 228 aa (81.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa228 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
148-220 aa · 73 aa · 32.0% of protein
Raw token
Trans_reg_C:148:1.27e-27:220:76:77- Raw architecture: Response_reg:2:3.07e-31:114:113:111#Trans_reg_C:148:1.27e-27:220:76:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002550015::NZ_NMTZ01000027.1::G00013
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span356270-358302Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCGS59_13660RefSeq proteinWP_097780373.1
Context group ID
GCF_002550015::NZ_NMTZ01000027.1::G00013Context members
CGS59_RS13695CGS59_RS13700
Partner locus tags
CGS59_RS13695CGS59_RS13700
Partner old locus tags
CGS59_13660CGS59_13665
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_097780373.1Primary protein accession used for annex mappings.
UniProt accessionA0A2A7AVI0Primary UniProt accession resolved in the annex database.
UniProt IDA0A2A7AVI0_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCGS59_RS13695Primary locus identifier stored in the genes table.
Old locus tagCGS59_13660Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NMTZ01000027.1Sequence record reported by the local genomic context database.
Genomic interval356 270-356 956 nt687 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span356 270-358 302 ntGCF_002550015::NZ_NMTZ01000027.1::G00013
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002550015::NZ_NMTZ01000027.1::G00013Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NMTZ01000027.1All displayed genes belong to this local TCS context.
Neighborhood span356 270-358 302 nt2 033 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
356 270 nt358 302 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CGS59_RS13695GCF_002550015#CGS59_RS13695
RROmpRCurrent focus
356 270-356 956 nt · Forward (+)
CGS59_RS13700GCF_002550015#CGS59_RS13700
HKClassic
356 953-358 302 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002550015#CGS59_RS13695The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1312342
Simplified PFAM architecture for RROC_1312342
PFAM domain coverage: 185 / 228 aa (81.1%)
1 aa228 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[2-113] | Trans_reg_C[148-220]
- Domain count: 2
- Matched identifier: RROC_1312342
- Positioned domains: Response_reg 2-113 ; Response_reg 2-113 ; Trans_reg_C 148-220 ; Trans_reg_C 148-220
Cluster members and taxonomy
Representative gene: GCF_002550015#CGS59_RS13695
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 853 · GCF_002550015
AssemblyASM255001v1 · Scaffoldhaploid
Genome composition2 915 240 bp · 56,5% GCFaecalibacterium prausnitzii
Signal transduction countsGenes 49 · HK 23 · RR 25CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusFaecalibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Faecalibacterium
Related genes
Preview from the same derived genome key