1 Response_reg#1
3-112 aa · 110 aa · 50.0% of protein
Raw token
Response_reg:3:1.01e-27:112:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CGS59_RS10365
Response regulator OmpR family
Faecalibacterium prausnitzii · GCF_002550015
ClassRRTypeOmpRLength220 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002550015#CGS59_RS10365Stable P2CS identifier used across views.
GenomeGCF_002550015Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Faecalibacterium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length220 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage185 / 220 aa (84.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa220 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
145-219 aa · 75 aa · 34.1% of protein
Raw token
Trans_reg_C:145:3.05e-23:219:76:77- Raw architecture: Response_reg:3:1.01e-27:112:111:111#Trans_reg_C:145:3.05e-23:219:76:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002550015::NZ_NMTZ01000026.1::G00015
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span56291-57966Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCGS59_10335RefSeq proteinWP_097779868.1
Context group ID
GCF_002550015::NZ_NMTZ01000026.1::G00015Context members
CGS59_RS10360CGS59_RS10365
Partner locus tags
CGS59_RS10360CGS59_RS10365
Partner old locus tags
CGS59_10330CGS59_10335
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_097779868.1Primary protein accession used for annex mappings.
UniProt accessionA0A2A7AVW8Primary UniProt accession resolved in the annex database.
UniProt IDA0A2A7AVW8_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCGS59_RS10365Primary locus identifier stored in the genes table.
Old locus tagCGS59_10335Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NMTZ01000026.1Sequence record reported by the local genomic context database.
Genomic interval57 304-57 966 nt663 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span56 291-57 966 ntGCF_002550015::NZ_NMTZ01000026.1::G00015
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002550015::NZ_NMTZ01000026.1::G00015Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NMTZ01000026.1All displayed genes belong to this local TCS context.
Neighborhood span56 291-57 966 nt1 676 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
56 291 nt57 966 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CGS59_RS10360GCF_002550015#CGS59_RS10360
HKClassic
56 291-57 307 nt · Reverse (-)
CGS59_RS10365GCF_002550015#CGS59_RS10365
RROmpRCurrent focus
57 304-57 966 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002550015#CGS59_RS10365The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1730403
Simplified PFAM architecture for RROC_1730403
PFAM domain coverage: 184 / 220 aa (83.6%)
1 aa220 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[3-112] | Trans_reg_C[146-219]
- Domain count: 2
- Matched identifier: RROC_1730403
- Positioned domains: Response_reg 3-112 ; Response_reg 3-112 ; Trans_reg_C 146-219 ; Trans_reg_C 146-219
Cluster members and taxonomy
Representative gene: GCF_002550015#CGS59_RS10365
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 853 · GCF_002550015
AssemblyASM255001v1 · Scaffoldhaploid
Genome composition2 915 240 bp · 56,5% GCFaecalibacterium prausnitzii
Signal transduction countsGenes 49 · HK 23 · RR 25CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusFaecalibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Faecalibacterium
Related genes
Preview from the same derived genome key